RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00055010290	Gene ID		Accession	-
Symbol	MKRN2	Alias	-	Full Name	NA
Status	Confidence	Length	34690 bases	Strand	Plus strand
Position	LUXU01049573.1 : 4141154 - 4175843	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055015872	zf-CCCH	PF00642	1e-20	1
ENSSSCP00055015872	zf-CCCH	PF00642	1e-20	2
ENSSSCP00055015872	zf-CCCH_2	PF14608	1.1e-14	3
ENSSSCP00055015872	zf-CCCH_2	PF14608	1.1e-14	4
ENSSSCP00055015872	zf-CCCH_2	PF14608	1.1e-14	5
ENSSSCP00055015872	zf-CCCH_2	PF14608	1.1e-14	6
ENSSSCP00055015918	zf-CCCH	PF00642	2.8e-18	1
ENSSSCP00055015918	zf-CCCH	PF00642	2.8e-18	2
ENSSSCP00055015918	zf-CCCH_2	PF14608	2.9e-13	3
ENSSSCP00055015918	zf-CCCH_2	PF14608	2.9e-13	4
ENSSSCP00055015918	zf-CCCH_2	PF14608	2.9e-13	5
ENSSSCP00055015918	zf-CCCH_2	PF14608	2.9e-13	6
ENSSSCP00055015896	zf-CCCH	PF00642	1.3e-09	1
ENSSSCP00055015896	zf-CCCH_2	PF14608	3.8e-08	2
ENSSSCP00055015896	zf-CCCH_2	PF14608	3.8e-08	3
ENSSSCP00055015953	zf-CCCH	PF00642	2.9e-09	1
ENSSSCP00055015953	zf-CCCH_2	PF14608	4.4e-08	2
ENSSSCP00055015953	zf-CCCH_2	PF14608	4.4e-08	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MKRN2-201	ENSSSCT00055020114	2671	415aa	ENSSSCP00055015872
MKRN2-202	ENSSSCT00055020143	2427	372aa	ENSSSCP00055015896
MKRN2-203	ENSSSCT00055020168	2763	427aa	ENSSSCP00055015918
MKRN2-204	ENSSSCT00055020205	3221	375aa	ENSSSCP00055015953

Gene Model

Click here to download ENSSSCG00055010290's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055010290's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055026441	45.0116	31.5545	sus_scrofa_pietrain	ENSSSCP00055015918	45.4333	31.8501
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055031811	51.0373	37.1369	sus_scrofa_pietrain	ENSSSCP00055015918	57.6112	41.9204

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_largewhite	ENSSSCP00025018766	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	88.993	87.1194	sus_scrofa	ENSSSCP00000025071	85.3933	83.5955
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	93.4426	90.1639	equus_caballus	ENSECAP00000064826	75.8555	73.1939
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	100	100	sus_scrofa_berkshire	ENSSSCP00065020462	100	100
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_tibetan	ENSSSCP00015031597	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_usmarc	ENSSSCP00070027659	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	89.4614	85.2459	ovis_aries_rambouillet	ENSOARP00020033623	91.8269	87.5
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	91.1007	85.9485	bos_taurus	ENSBTAP00000005927	91.9622	86.7612
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	100	100	sus_scrofa_wuzhishan	ENSSSCP00005027180	100	100
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	100	100	sus_scrofa_meishan	ENSSSCP00040028273	100	100
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_bamei	ENSSSCP00050001596	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_jinhua	ENSSSCP00060011668	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_landrace	ENSSSCP00045000301	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	96.4871	95.7845	sus_scrofa_hampshire	ENSSSCP00035045787	84.4262	83.8115
ENSSSCG00055010290	sus_scrofa_pietrain	ENSSSCP00055015918	100	100	sus_scrofa_rongchang	ENSSSCP00030026231	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression