Description

Ensembl ID ENSSSCG00055009314 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 82187 bases Strand Minus strand
Position LUXU01049728.1 : 1101954 - 1184140 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00055015021 RRM_5 PF13893 4.2e-45 1
ENSSSCP00055015021 RRM_5 PF13893 4.2e-45 2
ENSSSCP00055015021 RRM_5 PF13893 4.2e-45 3
ENSSSCP00055015021 RRM_8 PF11835 2e-14 4
ENSSSCP00055015021 RRM_1 PF00076 4.9e-26 5
ENSSSCP00055015021 RRM_1 PF00076 4.9e-26 6
ENSSSCP00055015290 RRM_5 PF13893 2.9e-44 1
ENSSSCP00055015290 RRM_5 PF13893 2.9e-44 2
ENSSSCP00055015290 RRM_5 PF13893 2.9e-44 3
ENSSSCP00055015290 RRM_8 PF11835 1.1e-14 4
ENSSSCP00055015290 RRM_1 PF00076 4.3e-23 5
ENSSSCP00055015290 RRM_1 PF00076 4.3e-23 6
ENSSSCP00055015241 RRM_5 PF13893 1.6e-30 1
ENSSSCP00055015241 RRM_5 PF13893 1.6e-30 2
ENSSSCP00055015241 RRM_5 PF13893 1.6e-30 3
ENSSSCP00055015241 RRM_8 PF11835 2e-14 4
ENSSSCP00055015241 RRM_1 PF00076 2.6e-19 5
ENSSSCP00055015191 RRM_5 PF13893 3.4e-30 1
ENSSSCP00055015191 RRM_5 PF13893 3.4e-30 2
ENSSSCP00055015191 RRM_5 PF13893 3.4e-30 3
ENSSSCP00055015191 RRM_8 PF11835 2.1e-14 4
ENSSSCP00055015191 RRM_1 PF00076 3.1e-19 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00055019046 1671 556aa ENSSSCP00055015021
- ENSSSCT00055019269 1563 520aa ENSSSCP00055015191
- ENSSSCT00055019327 1518 505aa ENSSSCP00055015241
- ENSSSCT00055019385 1287 428aa ENSSSCP00055015290

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005500270177.281261.825sus_scrofa_pietrainENSSSCP0005501502174.640359.7122
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005504288835.494919.2833sus_scrofa_pietrainENSSSCP0005501502137.410120.3237
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005500016936.745919.9269sus_scrofa_pietrainENSSSCP0005501502136.151119.6043
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005503721667.542557.8053sus_scrofa_pietrainENSSSCP0005501502178.597167.2662
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501592915.53567.68602sus_scrofa_pietrainENSSSCP0005501502134.172716.9065

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_largewhiteENSSSCP0002503519392.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofaENSSSCP0000000586392.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502185.611580.7554equus_caballusENSECAP0000004224359.574556.1952
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_berkshireENSSSCP0006501877692.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_tibetanENSSSCP0001501343892.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_usmarcENSSSCP0007003687392.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502189.208683.4532ovis_aries_rambouilletENSOARP0002002833558.147754.3962
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502191.906587.5899bos_taurusENSBTAP0000005735391.906587.5899
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502189.208686.3309sus_scrofa_wuzhishanENSSSCP0000502483993.058290.0563
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_meishanENSSSCP0004003233092.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_bameiENSSSCP0005004334192.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_jinhuaENSSSCP0006003286992.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_landraceENSSSCP0004504089692.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_hampshireENSSSCP0003501158092.639189.4075
ENSSSCG00055009314sus_scrofa_pietrainENSSSCP0005501502192.805889.5683sus_scrofa_rongchangENSSSCP0003000969392.639189.4075

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression