RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055008248	Gene ID		Accession	-
Symbol	ASCC1	Alias	-	Full Name	Sus scrofa activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant 2, mRNA.
Status	Confidence	Length	188630 bases	Strand	Minus strand
Position	LUXU01018019.1 : 912910 - 1101539	RNA binding domain	KH_1 , AKAP7_NLS
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055012761	KH_1	PF00013	9.5e-08	1
ENSSSCP00055012761	AKAP7_NLS	PF10469	6.4e-59	2
ENSSSCP00055012723	KH_1	PF00013	1.2e-07	1
ENSSSCP00055012723	AKAP7_NLS	PF10469	1.4e-48	2
ENSSSCP00055012672	KH_1	PF00013	1.5e-07	1
ENSSSCP00055012672	AKAP7_NLS	PF10469	7.8e-59	2
ENSSSCP00055012813	KH_1	PF00013	2.9e-06	1
ENSSSCP00055012813	AKAP7_NLS	PF10469	1.2e-48	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ASCC1-201	ENSSSCT00055016107	6692	462aa	ENSSSCP00055012672
ASCC1-202	ENSSSCT00055016173	1421	407aa	ENSSSCP00055012723
ASCC1-203	ENSSSCT00055016216	2150	357aa	ENSSSCP00055012761
ASCC1-204	ENSSSCT00055016272	1737	360aa	ENSSSCP00055012813

Gene Model

Click here to download ENSSSCG00055008248's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055008248's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055008248

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	71.8615	70.3463	sus_scrofa_largewhite	ENSSSCP00025047890	81.5725	79.8526
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	72.0779	70.5628	sus_scrofa	ENSSSCP00000021477	81.8182	80.0983
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	75.7576	73.5931	equus_caballus	ENSECAP00000076002	96.1538	93.4066
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	71.8615	70.3463	sus_scrofa_berkshire	ENSSSCP00065035032	81.5725	79.8526
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	88.0952	88.0952	sus_scrofa_tibetan	ENSSSCP00015017042	99.7549	99.7549
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	99.7835	99.7835	sus_scrofa_usmarc	ENSSSCP00070011217	98.927	98.927
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	83.9827	79.8701	ovis_aries_rambouillet	ENSOARP00020024774	69.9099	66.4865
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	76.6234	75.1082	bos_taurus	ENSBTAP00000000504	99.1597	97.1989
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	88.0952	88.0952	sus_scrofa_wuzhishan	ENSSSCP00005011713	99.7549	99.7549
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	72.0779	70.3463	sus_scrofa_meishan	ENSSSCP00040042346	81.8182	79.8526
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	71.8615	70.3463	sus_scrofa_bamei	ENSSSCP00050013453	81.5725	79.8526
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	88.0952	88.0952	sus_scrofa_jinhua	ENSSSCP00060029280	99.7549	99.7549
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	99.7835	99.7835	sus_scrofa_landrace	ENSSSCP00045023264	98.927	98.927
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	71.8615	70.3463	sus_scrofa_hampshire	ENSSSCP00035004106	81.5725	79.8526
ENSSSCG00055008248	sus_scrofa_pietrain	ENSSSCP00055012672	71.8615	70.3463	sus_scrofa_rongchang	ENSSSCP00030037126	81.5725	79.8526

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression