RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055006686	Gene ID		Accession	-
Symbol	RBFOX1	Alias	-	Full Name	NA
Status	Confidence	Length	1610045 bases	Strand	Minus strand
Position	LUXU01001781.1 : 11590 - 1621634	RNA binding domain	Fox-1_C , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055011157	Fox-1_C	PF12414	2.8e-43	1
ENSSSCP00055011157	RRM_1	PF00076	6.7e-18	2
ENSSSCP00055011189	Fox-1_C	PF12414	4.1e-43	1
ENSSSCP00055011189	RRM_1	PF00076	8.7e-18	2
ENSSSCP00055011078	Fox-1_C	PF12414	1.3e-42	1
ENSSSCP00055011078	RRM_1	PF00076	9.1e-08	2
ENSSSCP00055010897	Fox-1_C	PF12414	1.8e-42	1
ENSSSCP00055010897	RRM_1	PF00076	9.2e-18	2
ENSSSCP00055011001	Fox-1_C	PF12414	1.2e-40	1
ENSSSCP00055011001	RRM_1	PF00076	6.6e-18	2
ENSSSCP00055010609	Fox-1_C	PF12414	1.2e-40	1
ENSSSCP00055010609	RRM_1	PF00076	6.8e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RBFOX1-201	ENSSSCT00055013487	1956	415aa	ENSSSCP00055010609
RBFOX1-203	ENSSSCT00055013839	3298	466aa	ENSSSCP00055010897
RBFOX1-202	ENSSSCT00055013985	3321	403aa	ENSSSCP00055011001
RBFOX1-205	ENSSSCT00055014084	1416	391aa	ENSSSCP00055011078
RBFOX1-204	ENSSSCT00055014186	1436	375aa	ENSSSCP00055011157
RBFOX1-206	ENSSSCT00055014230	1524	435aa	ENSSSCP00055011189

Gene Model

Click here to download ENSSSCG00055006686's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055006686's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055008520	59.3333	52.8889	sus_scrofa_pietrain	ENSSSCP00055010897	57.2961	51.073
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055048913	66.5775	61.4973	sus_scrofa_pietrain	ENSSSCP00055010897	53.4335	49.3562

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	76.824	73.3906	sus_scrofa_largewhite	ENSSSCP00025026606	82.2989	78.6207
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	84.9785	83.0472	sus_scrofa	ENSSSCP00000076664	52.6596	51.4628
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	88.412	88.1974	equus_caballus	ENSECAP00000010926	77.7358	77.5472
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	99.7854	99.7854	sus_scrofa_berkshire	ENSSSCP00065006517	80.5893	80.5893
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	76.824	73.3906	sus_scrofa_tibetan	ENSSSCP00015042321	82.2989	78.6207
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	99.5708	99.5708	sus_scrofa_usmarc	ENSSSCP00070044183	100	100
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	74.6781	71.4592	ovis_aries_rambouillet	ENSOARP00020015902	62.3656	59.6774
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	73.6051	70.6009	bos_taurus	ENSBTAP00000069783	85.75	82.25
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	71.6738	68.4549	sus_scrofa_wuzhishan	ENSSSCP00005019034	80.0959	76.4988
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	76.824	73.3906	sus_scrofa_meishan	ENSSSCP00040023432	82.2989	78.6207
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	100	100	sus_scrofa_bamei	ENSSSCP00050038451	100	100
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	99.7854	99.7854	sus_scrofa_jinhua	ENSSSCP00060045878	80.5893	80.5893
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	95.0644	95.0644	sus_scrofa_landrace	ENSSSCP00045047305	99.7748	99.7748
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	76.824	73.3906	sus_scrofa_hampshire	ENSSSCP00035011992	82.2989	78.6207
ENSSSCG00055006686	sus_scrofa_pietrain	ENSSSCP00055010897	99.7854	99.7854	sus_scrofa_rongchang	ENSSSCP00030009518	80.5893	80.5893

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression