RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055006263	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	53161 bases	Strand	Plus strand
Position	LUXU01027473.1 : 492548 - 545708	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055009602	zf-CCCH	PF00642	5.1e-12	1
ENSSSCP00055009602	zf-CCCH	PF00642	5.1e-12	2
ENSSSCP00055009602	zf-CCCH_2	PF14608	2.5e-09	3
ENSSSCP00055009602	zf-CCCH_2	PF14608	2.5e-09	4
ENSSSCP00055009602	zf-CCCH_2	PF14608	2.5e-09	5
ENSSSCP00055009579	zf-CCCH	PF00642	5.1e-12	1
ENSSSCP00055009579	zf-CCCH	PF00642	5.1e-12	2
ENSSSCP00055009579	zf-CCCH_2	PF14608	2.5e-09	3
ENSSSCP00055009579	zf-CCCH_2	PF14608	2.5e-09	4
ENSSSCP00055009579	zf-CCCH_2	PF14608	2.5e-09	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055012127	2195	309aa	ENSSSCP00055009579
-	ENSSSCT00055012157	3946	308aa	ENSSSCP00055009602

Gene Model

Click here to download ENSSSCG00055006263's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055006263's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009421	16.8216	12.0034	sus_scrofa_pietrain	ENSSSCP00055009579	64.4013	45.9547
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009305	13.6951	8.78553	sus_scrofa_pietrain	ENSSSCP00055009579	51.4563	33.0097

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.7638	96.1165	sus_scrofa_largewhite	ENSSSCP00025001913	97.0779	96.4286
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	100	sus_scrofa	ENSSSCP00000057275	100	100
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	88.0259	82.8479	equus_caballus	ENSECAP00000020190	88.8889	83.6601
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.4401	95.7929	sus_scrofa_berkshire	ENSSSCP00065036875	96.7533	96.1039
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	99.6764	sus_scrofa_tibetan	ENSSSCP00015035793	100	99.6764
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.4401	95.7929	sus_scrofa_usmarc	ENSSSCP00070039209	96.7533	96.1039
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	88.6731	81.877	ovis_aries_rambouillet	ENSOARP00020002484	86.9841	80.3175
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	88.3495	80.9062	bos_taurus	ENSBTAP00000021230	89.8026	82.2368
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	100	sus_scrofa_wuzhishan	ENSSSCP00005022383	100	100
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	100	sus_scrofa_meishan	ENSSSCP00040034503	100	100
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.7638	96.1165	sus_scrofa_bamei	ENSSSCP00050046100	97.0779	96.4286
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.7638	96.1165	sus_scrofa_jinhua	ENSSSCP00060033824	97.0779	96.4286
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	96.7638	96.1165	sus_scrofa_landrace	ENSSSCP00045022825	97.0779	96.4286
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	100	sus_scrofa_hampshire	ENSSSCP00035012830	100	100
ENSSSCG00055006263	sus_scrofa_pietrain	ENSSSCP00055009579	100	100	sus_scrofa_rongchang	ENSSSCP00030040613	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression