Description

Ensembl ID ENSSSCG00055006026 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 76340 bases Strand Minus strand
Position LUXU01027473.1 : 416561 - 492900 RNA binding domain zf-CCCH , zf-CCCH_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00055009475 zf-CCCH PF00642 2.4e-11 1
ENSSSCP00055009475 zf-CCCH PF00642 2.4e-11 2
ENSSSCP00055009475 zf-CCCH_2 PF14608 2.6e-11 3
ENSSSCP00055009475 zf-CCCH_2 PF14608 2.6e-11 4
ENSSSCP00055009475 zf-CCCH_2 PF14608 2.6e-11 5
ENSSSCP00055009324 zf-CCCH PF00642 2.5e-11 1
ENSSSCP00055009324 zf-CCCH PF00642 2.5e-11 2
ENSSSCP00055009324 zf-CCCH_2 PF14608 2.7e-11 3
ENSSSCP00055009324 zf-CCCH_2 PF14608 2.7e-11 4
ENSSSCP00055009324 zf-CCCH_2 PF14608 2.7e-11 5
ENSSSCP00055009451 zf-CCCH PF00642 2.8e-11 1
ENSSSCP00055009451 zf-CCCH PF00642 2.8e-11 2
ENSSSCP00055009451 zf-CCCH_2 PF14608 3e-11 3
ENSSSCP00055009451 zf-CCCH_2 PF14608 3e-11 4
ENSSSCP00055009451 zf-CCCH_2 PF14608 3e-11 5
ENSSSCP00055009374 zf-CCCH PF00642 3e-11 1
ENSSSCP00055009374 zf-CCCH PF00642 3e-11 2
ENSSSCP00055009374 zf-CCCH_2 PF14608 3.3e-11 3
ENSSSCP00055009374 zf-CCCH_2 PF14608 3.3e-11 4
ENSSSCP00055009374 zf-CCCH_2 PF14608 3.3e-11 5
ENSSSCP00055009421 zf-CCCH PF00642 3e-11 1
ENSSSCP00055009421 zf-CCCH PF00642 3e-11 2
ENSSSCP00055009421 zf-CCCH_2 PF14608 3.3e-11 3
ENSSSCP00055009421 zf-CCCH_2 PF14608 3.3e-11 4
ENSSSCP00055009421 zf-CCCH_2 PF14608 3.3e-11 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00055011789 5128 1122aa ENSSSCP00055009324
- ENSSSCT00055011854 6092 1181aa ENSSSCP00055009374
- ENSSSCT00055011921 5314 1183aa ENSSSCP00055009421
- ENSSSCT00055011963 3571 1153aa ENSSSCP00055009451
- ENSSSCT00055011994 4694 1105aa ENSSSCP00055009475

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500957964.401345.9547sus_scrofa_pietrainENSSSCP0005500942116.821612.0034
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500930539.879428.5099sus_scrofa_pietrainENSSSCP0005500942139.137827.9797

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942196.956996.9569sus_scrofa_largewhiteENSSSCP0002500196099.912999.9129
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942199.915599.9155sus_scrofaENSSSCP0000004858399.915599.9155
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942192.645889.8563equus_caballusENSECAP0000008040891.257388.5096
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942196.956996.9569sus_scrofa_berkshireENSSSCP0006503709399.912999.9129
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942190.27989.5182sus_scrofa_tibetanENSSSCP0001503571796.129695.3195
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942199.915599.9155sus_scrofa_usmarcENSSSCP0007003884099.915599.9155
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942190.532586.3905ovis_aries_rambouilletENSOARP0002000252491.538587.3504
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942116.652615.8918bos_taurusENSBTAP0000002751496.568692.1569
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942198.901198.9011sus_scrofa_wuzhishanENSSSCP0000502233198.901198.9011
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942199.830999.8309sus_scrofa_meishanENSSSCP0004003438399.830999.8309
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942196.872496.8724sus_scrofa_bameiENSSSCP0005004610799.825899.8258
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942196.872496.8724sus_scrofa_jinhuaENSSSCP0006003391199.825899.8258
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942196.956996.9569sus_scrofa_landraceENSSSCP0004502308599.912999.9129
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942199.915599.9155sus_scrofa_hampshireENSSSCP0003501265199.915599.9155
ENSSSCG00055006026sus_scrofa_pietrainENSSSCP0005500942199.830999.8309sus_scrofa_rongchangENSSSCP0003004054399.830999.8309

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression