RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055006000	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	40648 bases	Strand	Plus strand
Position	LUXU01041859.1 : 224161 - 264808	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055009305	zf-CCCH	PF00642	1.6e-12	1
ENSSSCP00055009305	zf-CCCH_2	PF14608	5.7e-10	2
ENSSSCP00055009305	zf-CCCH_2	PF14608	5.7e-10	3
ENSSSCP00055009305	zf-CCCH_2	PF14608	5.7e-10	4
ENSSSCP00055009358	zf-CCCH_2	PF14608	8.4e-07	1
ENSSSCP00055009358	zf-CCCH_2	PF14608	8.4e-07	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055011756	3567	1161aa	ENSSSCP00055009305
-	ENSSSCT00055011828	3378	1125aa	ENSSSCP00055009358

Gene Model

Click here to download ENSSSCG00055006000's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055006000's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009421	39.1378	27.9797	sus_scrofa_pietrain	ENSSSCP00055009305	39.8794	28.5099
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009579	51.4563	33.0097	sus_scrofa_pietrain	ENSSSCP00055009305	13.6951	8.78553

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	95.0904	94.2291	sus_scrofa_largewhite	ENSSSCP00025006426	83.1952	82.4416
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	99.5693	99.5693	sus_scrofa	ENSSSCP00000073512	92.554	92.554
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	87.0801	84.3239	equus_caballus	ENSECAP00000037471	72.5251	70.2296
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	99.3971	99.3971	sus_scrofa_berkshire	ENSSSCP00065004173	98.9708	98.9708
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	85.6158	85.0129	sus_scrofa_tibetan	ENSSSCP00015001304	91.3603	90.7169
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	95.0904	94.4875	sus_scrofa_usmarc	ENSSSCP00070047932	80.6428	80.1315
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	82.3428	79.5004	ovis_aries_rambouillet	ENSOARP00020014676	73.3691	70.8365
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	82.4289	79.6727	bos_taurus	ENSBTAP00000012237	73.4459	70.99
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	75.1077	74.0741	sus_scrofa_wuzhishan	ENSSSCP00005010456	82.654	81.5166
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	85.5297	84.7545	sus_scrofa_meishan	ENSSSCP00040041162	76.4434	75.7506
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	99.0525	98.9664	sus_scrofa_bamei	ENSSSCP00050005920	98.5433	98.4576
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	85.5297	84.7545	sus_scrofa_jinhua	ENSSSCP00060043486	76.4434	75.7506
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	97.5883	97.5883	sus_scrofa_landrace	ENSSSCP00045042776	99.9118	99.9118
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	85.3575	84.5823	sus_scrofa_hampshire	ENSSSCP00035031973	76.1137	75.4224
ENSSSCG00055006000	sus_scrofa_pietrain	ENSSSCP00055009305	81.2231	80.2756	sus_scrofa_rongchang	ENSSSCP00030033185	75.3195	74.4409

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression