RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055005502	Gene ID	100513594	Accession	-
Symbol	RBFOX2	Alias	-	Full Name	RNA binding fox-1 homolog 2
Status	Confidence	Length	271920 bases	Strand	Plus strand
Position	LUXU01036901.1 : 133381 - 405300	RNA binding domain	Fox-1_C , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055008520	Fox-1_C	PF12414	1.1e-40	1
ENSSSCP00055008520	RRM_1	PF00076	1.6e-17	2
ENSSSCP00055008585	Fox-1_C	PF12414	8.1e-35	1
ENSSSCP00055008585	RRM_1	PF00076	7.6e-19	2
ENSSSCP00055008641	Fox-1_C	PF12414	8.2e-35	1
ENSSSCP00055008641	RRM_1	PF00076	8.4e-19	2
ENSSSCP00055008561	Fox-1_C	PF12414	8.2e-35	1
ENSSSCP00055008561	RRM_1	PF00076	7.8e-19	2
ENSSSCP00055008687	Fox-1_C	PF12414	2.9e-27	1
ENSSSCP00055008687	RRM_1	PF00076	8.1e-18	2
ENSSSCP00055008725	Fox-1_C	PF12414	3.5e-19	1
ENSSSCP00055008725	RRM_1	PF00076	7.2e-18	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RBFOX2-201	ENSSSCT00055010771	1600	450aa	ENSSSCP00055008520
RBFOX2-202	ENSSSCT00055010824	1559	377aa	ENSSSCP00055008561
RBFOX2-203	ENSSSCT00055010857	6906	373aa	ENSSSCP00055008585
RBFOX2-204	ENSSSCT00055010937	7156	387aa	ENSSSCP00055008641
RBFOX2-206	ENSSSCT00055010999	1733	394aa	ENSSSCP00055008687
RBFOX2-205	ENSSSCT00055011049	1636	367aa	ENSSSCP00055008725

Gene Model

Click here to download ENSSSCG00055005502's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055005502's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055010897	57.2961	51.073	sus_scrofa_pietrain	ENSSSCP00055008520	59.3333	52.8889
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055048913	65.2406	59.6257	sus_scrofa_pietrain	ENSSSCP00055008520	54.2222	49.5556

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	78.6667	75.7778	sus_scrofa_largewhite	ENSSSCP00025030745	67.3004	64.8289
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa	ENSSSCP00000050001	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	87.7778	85.7778	equus_caballus	ENSECAP00000085477	85.1293	83.1897
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_berkshire	ENSSSCP00065015105	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_usmarc	ENSSSCP00070018810	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	98.6667	98.6667	ovis_aries_rambouillet	ENSOARP00020027000	98.6667	98.6667
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	97.3333	96.6667	bos_taurus	ENSBTAP00000066608	97.1175	96.4523
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	71.7778	69.1111	sus_scrofa_wuzhishan	ENSSSCP00005015204	81.9797	78.934
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	99.7778	99.7778	sus_scrofa_meishan	ENSSSCP00040039744	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_bamei	ENSSSCP00050031311	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	79.3333	76.6667	sus_scrofa_jinhua	ENSSSCP00060020146	67.4858	65.2174
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_landrace	ENSSSCP00045019569	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_hampshire	ENSSSCP00035030219	100	100
ENSSSCG00055005502	sus_scrofa_pietrain	ENSSSCP00055008520	100	100	sus_scrofa_rongchang	ENSSSCP00030014286	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression