RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055003831	Gene ID	100521716	Accession	-
Symbol	MATR3	Alias	-	Full Name	matrin 3
Status	Confidence	Length	51488 bases	Strand	Minus strand
Position	LUXU01024311.1 : 2914160 - 2965647	RNA binding domain	RRM_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055005974	RRM_5	PF13893	4.1e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MATR3-201	ENSSSCT00055007547	3489	561aa	ENSSSCP00055005974
MATR3-202	ENSSSCT00055007569	4603	854aa	ENSSSCP00055005992
MATR3-203	ENSSSCT00055007576	3994	864aa	ENSSSCP00055005997
MATR3-204	ENSSSCT00055007589	4064	796aa	ENSSSCP00055006009
MATR3-205	ENSSSCT00055007599	4096	897aa	ENSSSCP00055006017

Gene Model

Click here to download ENSSSCG00055003831's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055003831's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055028356	22.5096	12.6437	sus_scrofa_pietrain	ENSSSCP00055006017	52.3969	29.4314

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_largewhite	ENSSSCP00025037879	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa	ENSSSCP00000015258	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	94.4259	94.0914	equus_caballus	ENSECAP00000027074	99.7644	99.4111
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_berkshire	ENSSSCP00065034362	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	96.3211	96.3211	sus_scrofa_tibetan	ENSSSCP00015017630	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_usmarc	ENSSSCP00070039070	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	94.2029	93.9799	ovis_aries_rambouillet	ENSOARP00020022738	99.5289	99.2933
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	58.7514	57.5251	bos_taurus	ENSBTAP00000057776	97.2325	95.2029
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	93.311	92.9766	bos_taurus	ENSBTAP00000051115	99.1706	98.8152
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	94.6488	94.4259	sus_scrofa_wuzhishan	ENSSSCP00005005482	99.0665	98.8331
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_meishan	ENSSSCP00040013596	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_bamei	ENSSSCP00050045599	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_jinhua	ENSSSCP00060004648	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_landrace	ENSSSCP00045023583	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_hampshire	ENSSSCP00035028063	100	100
ENSSSCG00055003831	sus_scrofa_pietrain	ENSSSCP00055006017	100	100	sus_scrofa_rongchang	ENSSSCP00030022324	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression