RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00055002369	Gene ID	100512288	Accession	-
Symbol	SF3A3	Alias	-	Full Name	splicing factor 3a subunit 3
Status	Confidence	Length	24733 bases	Strand	Plus strand
Position	LUXU01023059.1 : 322868 - 347600	RNA binding domain	SF3a60_Prp9_C , SF3a60_bindingd
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055003499	SF3a60_Prp9_C	PF11931	1.1e-54	1
ENSSSCP00055003499	SF3a60_bindingd	PF12108	1.8e-15	2
ENSSSCP00055003483	SF3a60_Prp9_C	PF11931	1.1e-54	1
ENSSSCP00055003483	SF3a60_bindingd	PF12108	2e-15	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
SF3A3-201	ENSSSCT00055004521	1832	506aa	ENSSSCP00055003483
SF3A3-202	ENSSSCT00055004539	1718	495aa	ENSSSCP00055003499

Gene Model

Click here to download ENSSSCG00055002369's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055002369's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055021668	38.2418	17.8022	sus_scrofa_pietrain	ENSSSCP00055003483	34.3874	16.0079

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa_largewhite	ENSSSCP00025017619	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa	ENSSSCP00000003948	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	98.8142	equus_caballus	ENSECAP00000028961	84.6284	84.4595
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa_berkshire	ENSSSCP00065001015	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	100	100	sus_scrofa_tibetan	ENSSSCP00015030334	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa_usmarc	ENSSSCP00070045993	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	98.8142	ovis_aries_rambouillet	ENSOARP00020021978	100	99.8004
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	98.8142	bos_taurus	ENSBTAP00000065151	100	99.8004
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	98.419	97.8261	sus_scrofa_wuzhishan	ENSSSCP00005024274	99.4012	98.8024
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	100	100	sus_scrofa_meishan	ENSSSCP00040006436	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	100	100	sus_scrofa_bamei	ENSSSCP00050033635	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	100	100	sus_scrofa_jinhua	ENSSSCP00060043344	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	100	100	sus_scrofa_landrace	ENSSSCP00045004232	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa_hampshire	ENSSSCP00035011945	100	100
ENSSSCG00055002369	sus_scrofa_pietrain	ENSSSCP00055003483	99.0119	99.0119	sus_scrofa_rongchang	ENSSSCP00030025607	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression