RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055002019	Gene ID	100525341	Accession	-
Symbol	TENT5C	Alias	-	Full Name	terminal nucleotidyltransferase 5C
Status	Confidence	Length	22151 bases	Strand	Minus strand
Position	LUXU01013410.1 : 1684710 - 1706860	RNA binding domain	NTP_transf_7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055002881	NTP_transf_7	PF07984	1.1e-156	1
ENSSSCP00055002886	NTP_transf_7	PF07984	1.1e-156	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TENT5C-201	ENSSSCT00055003777	5710	391aa	ENSSSCP00055002881
TENT5C-202	ENSSSCT00055003783	5395	391aa	ENSSSCP00055002886

Gene Model

Click here to download ENSSSCG00055002019's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055002019's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055009063	77.4359	62.5641	sus_scrofa_pietrain	ENSSSCP00055002881	77.2379	62.4041
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055004432	73.5023	63.5945	sus_scrofa_pietrain	ENSSSCP00055002881	81.5857	70.5882
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055023642	68.2243	56.7757	sus_scrofa_pietrain	ENSSSCP00055002881	74.6803	62.1483

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_largewhite	ENSSSCP00025015475	100	100
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa	ENSSSCP00000070472	100	100
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	98.7212	97.1867	equus_caballus	ENSECAP00000017110	91.0377	89.6226
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_tibetan	ENSSSCP00015015025	100	100
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_usmarc	ENSSSCP00070005804	92.435	92.435
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	97.6982	96.4194	ovis_aries_rambouillet	ENSOARP00020001385	97.6982	96.4194
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	97.6982	96.4194	bos_taurus	ENSBTAP00000056377	97.6982	96.4194
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_meishan	ENSSSCP00040029183	92.217	92.217
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_bamei	ENSSSCP00050017082	92.217	92.217
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_jinhua	ENSSSCP00060026125	92.435	92.435
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_landrace	ENSSSCP00045006856	92.435	92.435
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_hampshire	ENSSSCP00035038284	100	100
ENSSSCG00055002019	sus_scrofa_pietrain	ENSSSCP00055002881	100	100	sus_scrofa_rongchang	ENSSSCP00030020494	92.217	92.217

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression