RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055001867	Gene ID	100515203	Accession	-
Symbol	PTBP2	Alias	-	Full Name	polypyrimidine tract binding protein 2
Status	Confidence	Length	80353 bases	Strand	Plus strand
Position	LUXU01001972.1 : 6247043 - 6327395	RNA binding domain	RRM_5 , RRM_8 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055002728	RRM_5	PF13893	1.8e-55	1
ENSSSCP00055002728	RRM_5	PF13893	1.8e-55	2
ENSSSCP00055002728	RRM_5	PF13893	1.8e-55	3
ENSSSCP00055002728	RRM_8	PF11835	1.1e-15	4
ENSSSCP00055002728	RRM_1	PF00076	1.6e-31	5
ENSSSCP00055002728	RRM_1	PF00076	1.6e-31	6
ENSSSCP00055002728	RRM_1	PF00076	1.6e-31	7
ENSSSCP00055002701	RRM_5	PF13893	2.4e-55	1
ENSSSCP00055002701	RRM_5	PF13893	2.4e-55	2
ENSSSCP00055002701	RRM_5	PF13893	2.4e-55	3
ENSSSCP00055002701	RRM_8	PF11835	1.3e-15	4
ENSSSCP00055002701	RRM_1	PF00076	2.3e-31	5
ENSSSCP00055002701	RRM_1	PF00076	2.3e-31	6
ENSSSCP00055002701	RRM_1	PF00076	2.3e-31	7
ENSSSCP00055002692	RRM_5	PF13893	2.5e-11	1
ENSSSCP00055002692	RRM_8	PF11835	2.1e-15	2
ENSSSCP00055002692	RRM_1	PF00076	1.2e-12	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PTBP2-201	ENSSSCT00055003544	3200	356aa	ENSSSCP00055002692
PTBP2-202	ENSSSCT00055003558	3140	537aa	ENSSSCP00055002701
PTBP2-203	ENSSSCT00055003585	3273	501aa	ENSSSCP00055002728

Gene Model

Click here to download ENSSSCG00055001867's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055001867's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055015021	74.6403	59.7122	sus_scrofa_pietrain	ENSSSCP00055002701	77.2812	61.825
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055042888	37.5427	22.3549	sus_scrofa_pietrain	ENSSSCP00055002701	40.9683	24.3948
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055000169	40.9506	24.1316	sus_scrofa_pietrain	ENSSSCP00055002701	41.7132	24.581
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055037216	70.17	60.5873	sus_scrofa_pietrain	ENSSSCP00055002701	84.5438	72.9981
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055015929	14.7997	8.09485	sus_scrofa_pietrain	ENSSSCP00055002701	33.7058	18.4358

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_largewhite	ENSSSCP00025036644	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa	ENSSSCP00000022075	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	equus_caballus	ENSECAP00000078860	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_berkshire	ENSSSCP00065030014	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	92.1788	91.9926	sus_scrofa_tibetan	ENSSSCP00015019440	98.8024	98.6028
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	98.8827	98.8827	sus_scrofa_usmarc	ENSSSCP00070019951	99.812	99.812
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	99.8138	99.2551	ovis_aries_rambouillet	ENSOARP00020001420	100	99.4403
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	97.9516	97.3929	bos_taurus	ENSBTAP00000071225	98.8722	98.3083
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	99.4413	99.4413	sus_scrofa_wuzhishan	ENSSSCP00005008488	99.4413	99.4413
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_meishan	ENSSSCP00040018760	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_bamei	ENSSSCP00050006571	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_jinhua	ENSSSCP00060005711	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_landrace	ENSSSCP00045040384	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_hampshire	ENSSSCP00035006619	100	100
ENSSSCG00055001867	sus_scrofa_pietrain	ENSSSCP00055002701	100	100	sus_scrofa_rongchang	ENSSSCP00030032034	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression