| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00055001847 | Gene ID |
|
Accession |
- |
| Symbol |
PABPC1 |
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
90609 bases |
Strand |
Plus strand |
| Position |
LUXU01005814.1 : 2282193 - 2372801 |
RNA binding domain |
PABP , RRM_5 , RRM_1 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00055002614 |
PABP |
PF00658 |
3.7e-31 |
1 |
| ENSSSCP00055002614 |
RRM_5 |
PF13893 |
1.5e-07 |
2 |
| ENSSSCP00055002614 |
RRM_1 |
PF00076 |
1.4e-83 |
3 |
| ENSSSCP00055002614 |
RRM_1 |
PF00076 |
1.4e-83 |
4 |
| ENSSSCP00055002614 |
RRM_1 |
PF00076 |
1.4e-83 |
5 |
| ENSSSCP00055002614 |
RRM_1 |
PF00076 |
1.4e-83 |
6 |
| ENSSSCP00055002596 |
PABP |
PF00658 |
5.8e-31 |
1 |
| ENSSSCP00055002596 |
RRM_5 |
PF13893 |
2.6e-07 |
2 |
| ENSSSCP00055002596 |
RRM_1 |
PF00076 |
2.1e-91 |
3 |
| ENSSSCP00055002596 |
RRM_1 |
PF00076 |
2.1e-91 |
4 |
| ENSSSCP00055002596 |
RRM_1 |
PF00076 |
2.1e-91 |
5 |
| ENSSSCP00055002596 |
RRM_1 |
PF00076 |
2.1e-91 |
6 |
| ENSSSCP00055002625 |
PABP |
PF00658 |
9.5e-31 |
1 |
| ENSSSCP00055002625 |
RRM_5 |
PF13893 |
3.6e-07 |
2 |
| ENSSSCP00055002625 |
RRM_1 |
PF00076 |
3.6e-91 |
3 |
| ENSSSCP00055002625 |
RRM_1 |
PF00076 |
3.6e-91 |
4 |
| ENSSSCP00055002625 |
RRM_1 |
PF00076 |
3.6e-91 |
5 |
| ENSSSCP00055002625 |
RRM_1 |
PF00076 |
3.6e-91 |
6 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| PABPC1-201 |
ENSSSCT00055003437 |
3059 |
636aa |
ENSSSCP00055002596 |
| PABPC1-202 |
ENSSSCT00055003458 |
2792 |
522aa |
ENSSSCP00055002614 |
| PABPC1-203 |
ENSSSCT00055003471 |
2683 |
703aa |
ENSSSCP00055002625 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055014835 | 60.1351 | 43.9189 | sus_scrofa_pietrain | ENSSSCP00055002625 | 12.66 | 9.24609 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055034472 | 23.1689 | 12.5561 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.0484 | 11.9488 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055046935 | 42.7793 | 22.8883 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.3329 | 11.9488 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055012071 | 23.0932 | 10.5932 | sus_scrofa_pietrain | ENSSSCP00055002625 | 15.505 | 7.11238 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055032036 | 26.4559 | 13.8103 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.6174 | 11.8065 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055034001 | 27.1722 | 14.218 | sus_scrofa_pietrain | ENSSSCP00055002625 | 24.4666 | 12.8023 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055047960 | 29.6422 | 16.8654 | sus_scrofa_pietrain | ENSSSCP00055002625 | 24.7511 | 14.0825 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055046663 | 31.941 | 17.6904 | sus_scrofa_pietrain | ENSSSCP00055002625 | 18.4922 | 10.2418 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055014222 | 81.4536 | 67.1679 | sus_scrofa_pietrain | ENSSSCP00055002625 | 46.2304 | 38.1223 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055019479 | 48.1595 | 28.2209 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.3329 | 13.0868 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055019234 | 29.638 | 15.8371 | sus_scrofa_pietrain | ENSSSCP00055002625 | 18.6344 | 9.95733 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055046366 | 35.8491 | 21.934 | sus_scrofa_pietrain | ENSSSCP00055002625 | 21.6216 | 13.229 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055035066 | 21.7877 | 13.4078 | sus_scrofa_pietrain | ENSSSCP00055002625 | 5.54765 | 3.41394 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055010143 | 45.898 | 39.9113 | sus_scrofa_pietrain | ENSSSCP00055002625 | 29.4452 | 25.6046 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055016113 | 41.0853 | 22.9974 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.6174 | 12.66 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055023354 | 78.2723 | 62.8272 | sus_scrofa_pietrain | ENSSSCP00055002625 | 42.532 | 34.1394 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055014558 | 81.3115 | 70.3279 | sus_scrofa_pietrain | ENSSSCP00055002625 | 70.5548 | 61.0242 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055005680 | 28.481 | 15.6118 | sus_scrofa_pietrain | ENSSSCP00055002625 | 19.2034 | 10.5263 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055013832 | 34.3096 | 23.0126 | sus_scrofa_pietrain | ENSSSCP00055002625 | 11.6643 | 7.82361 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002699 | 17.7835 | 7.2165 | sus_scrofa_pietrain | ENSSSCP00055002625 | 9.81508 | 3.98293 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055022231 | 24.1546 | 11.5942 | sus_scrofa_pietrain | ENSSSCP00055002625 | 14.2248 | 6.82788 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055000681 | 29.6552 | 16.3218 | sus_scrofa_pietrain | ENSSSCP00055002625 | 18.3499 | 10.0996 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055041531 | 81.5988 | 73.7557 | sus_scrofa_pietrain | ENSSSCP00055002625 | 76.9559 | 69.559 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055015773 | 39.3035 | 21.6418 | sus_scrofa_pietrain | ENSSSCP00055002625 | 22.4751 | 12.3755 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_largewhite | ENSSSCP00025043593 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.0427 | 90.0427 | sus_scrofa | ENSSSCP00000026891 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_berkshire | ENSSSCP00065019254 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 81.3656 | 81.3656 | sus_scrofa_tibetan | ENSSSCP00015041640 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_usmarc | ENSSSCP00070019451 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 81.2233 | 81.2233 | sus_scrofa_wuzhishan | ENSSSCP00005034680 | 89.7799 | 89.7799 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_meishan | ENSSSCP00040009220 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_bamei | ENSSSCP00050019620 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_jinhua | ENSSSCP00060028861 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_landrace | ENSSSCP00045036339 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 90.4694 | 90.4694 | sus_scrofa_hampshire | ENSSSCP00035006440 | 100 | 100 |
| ENSSSCG00055001847 | sus_scrofa_pietrain | ENSSSCP00055002625 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030000222 | 100 | 100 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
