RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055001597	Gene ID	100520885	Accession	-
Symbol	TRMT112	Alias	-	Full Name	tRNA methyltransferase subunit 11-2
Status	Confidence	Length	1378 bases	Strand	Plus strand
Position	LUXU01001733.1 : 3458994 - 3460371	RNA binding domain	Trm112p
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055002212	Trm112p	PF03966	6.7e-16	1
ENSSSCP00055002200	Trm112p	PF03966	9.7e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TRMT112-201	ENSSSCT00055002930	965	154aa	ENSSSCP00055002200
TRMT112-202	ENSSSCT00055002944	954	125aa	ENSSSCP00055002212

Gene Model

Click here to download ENSSSCG00055001597's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055001597's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001597

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_largewhite	ENSSSCP00025031958	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa	ENSSSCP00000013856	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_berkshire	ENSSSCP00065008389	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_tibetan	ENSSSCP00015024301	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	100	100	sus_scrofa_usmarc	ENSSSCP00070039331	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	78.5714	73.3766	ovis_aries_rambouillet	ENSOARP00020010391	96.8	90.4
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	78.5714	72.7273	bos_taurus	ENSBTAP00000011401	96.8	89.6
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	66.2338	61.039	bos_taurus	ENSBTAP00000054659	87.931	81.0345
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_wuzhishan	ENSSSCP00005018762	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_meishan	ENSSSCP00040022366	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	100	100	sus_scrofa_bamei	ENSSSCP00050018651	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_jinhua	ENSSSCP00060018000	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_jinhua	ENSSSCP00060025124	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	99.3506	99.3506	sus_scrofa_landrace	ENSSSCP00045032817	99.3506	99.3506
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	100	100	sus_scrofa_hampshire	ENSSSCP00035048642	100	100
ENSSSCG00055001597	sus_scrofa_pietrain	ENSSSCP00055002200	81.1688	81.1688	sus_scrofa_rongchang	ENSSSCP00030008479	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression