RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00055001047	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	12170 bases	Strand	Plus strand
Position	LUXU01022814.1 : 2155649 - 2167818	RNA binding domain	CAF1 , zf-CCCH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00055001398	CAF1	PF04857	2.4e-92	1
ENSSSCP00055001398	CAF1	PF04857	2.4e-92	2
ENSSSCP00055001398	zf-CCCH	PF00642	1.7e-06	3
ENSSSCP00055001413	CAF1	PF04857	3.5e-92	1
ENSSSCP00055001413	CAF1	PF04857	3.5e-92	2
ENSSSCP00055001427	CAF1	PF04857	1.3e-81	1
ENSSSCP00055001427	CAF1	PF04857	1.3e-81	2
ENSSSCP00055001427	zf-CCCH	PF00642	1.8e-06	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00055001842	2537	510aa	ENSSSCP00055001398
-	ENSSSCT00055001862	2808	537aa	ENSSSCP00055001413
-	ENSSSCT00055001878	1976	534aa	ENSSSCP00055001427

Gene Model

Click here to download ENSSSCG00055001047's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00055001047's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055000328	24.1958	15.5245	sus_scrofa_pietrain	ENSSSCP00055001413	32.216	20.6704
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055028769	25.8004	15.0659	sus_scrofa_pietrain	ENSSSCP00055001413	25.5121	14.8976

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	100	100	sus_scrofa_largewhite	ENSSSCP00025036887	100	100
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	94.041	93.8548	sus_scrofa	ENSSSCP00000004233	99.2141	99.0177
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	87.5233	83.9851	equus_caballus	ENSECAP00000020698	92.3379	88.6051
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	93.4823	92.9237	sus_scrofa_berkshire	ENSSSCP00065037131	94.0075	93.4457
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	92.5512	91.9926	sus_scrofa_tibetan	ENSSSCP00015043547	93.0712	92.5094
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	94.2272	94.2272	sus_scrofa_usmarc	ENSSSCP00070051211	99.2157	99.2157
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	85.4749	82.1229	ovis_aries_rambouillet	ENSOARP00020000025	90	86.4706
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	85.8473	82.8678	bos_taurus	ENSBTAP00000040666	87.9771	84.9237
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	93.1099	92.365	sus_scrofa_wuzhishan	ENSSSCP00005033547	93.633	92.8839
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	92.9237	92.1788	sus_scrofa_meishan	ENSSSCP00040023475	93.4457	92.6966
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	99.4413	99.2551	sus_scrofa_bamei	ENSSSCP00050036235	99.4413	99.2551
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	99.2551	99.2551	sus_scrofa_jinhua	ENSSSCP00060046201	99.2551	99.2551
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	92.7374	92.1788	sus_scrofa_landrace	ENSSSCP00045045565	93.2584	92.6966
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	91.0615	91.0615	sus_scrofa_hampshire	ENSSSCP00035038521	99.5927	99.5927
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	99.4413	99.4413	sus_scrofa_hampshire	ENSSSCP00035037472	99.4413	99.4413
ENSSSCG00055001047	sus_scrofa_pietrain	ENSSSCP00055001413	92.7374	92.1788	sus_scrofa_rongchang	ENSSSCP00030013690	93.2584	92.6966

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression