RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050078541	Gene ID		Accession	-
Symbol	TNRC6A	Alias	-	Full Name	NA
Status	Confidence	Length	243471 bases	Strand	Plus strand
Position	LUXV01011520.1 : 2110342 - 2353812	RNA binding domain	TNRC6-PABC_bdg , Ago_hook
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050047961	TNRC6-PABC_bdg	PF16608	2.8e-124	1
ENSSSCP00050047961	Ago_hook	PF10427	7.6e-22	2
ENSSSCP00050047971	TNRC6-PABC_bdg	PF16608	2.8e-124	1
ENSSSCP00050047971	Ago_hook	PF10427	8.1e-22	2
ENSSSCP00050048008	TNRC6-PABC_bdg	PF16608	2.8e-124	1
ENSSSCP00050047997	TNRC6-PABC_bdg	PF16608	3e-124	1
ENSSSCP00050047997	Ago_hook	PF10427	8.7e-22	2
ENSSSCP00050047987	TNRC6-PABC_bdg	PF16608	6.2e-98	1
ENSSSCP00050047987	TNRC6-PABC_bdg	PF16608	6.2e-98	2
ENSSSCP00050047987	Ago_hook	PF10427	7.7e-22	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TNRC6A-201	ENSSSCT00050108226	6843	1795aa	ENSSSCP00050047961
TNRC6A-202	ENSSSCT00050108238	7205	1798aa	ENSSSCP00050047971
TNRC6A-203	ENSSSCT00050108264	6918	1905aa	ENSSSCP00050047987
TNRC6A-204	ENSSSCT00050108277	7051	1915aa	ENSSSCP00050047997
TNRC6A-205	ENSSSCT00050108291	6513	1829aa	ENSSSCP00050048008

Gene Model

Click here to download ENSSSCG00050078541's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050078541's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050030082	54.954	42.9009	sus_scrofa_bamei	ENSSSCP00050047997	56.188	43.8642
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050041628	32.4803	13.7795	sus_scrofa_bamei	ENSSSCP00050047997	8.61619	3.65535
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050033515	52.4625	38.758	sus_scrofa_bamei	ENSSSCP00050047997	51.1749	37.8068
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050007393	34.0426	16.1094	sus_scrofa_bamei	ENSSSCP00050047997	5.84856	2.76762

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	99.9478	sus_scrofa_usmarc	ENSSSCP00070033174	97.5051	97.4542
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa	ENSSSCP00000057591	97.5051	97.5051
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	99.9478	sus_scrofa_largewhite	ENSSSCP00025024557	97.5051	97.4542
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	98.0679	97.2324	equus_caballus	ENSECAP00000023421	96.2583	95.4382
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	94.9347	93.6815	bos_taurus	ENSBTAP00000055965	94.8852	93.6326
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	97.4413	97.4413	sus_scrofa_wuzhishan	ENSSSCP00005011282	97.4413	97.4413
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_jinhua	ENSSSCP00060014278	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_landrace	ENSSSCP00045046758	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	99.9478	99.9478	sus_scrofa_tibetan	ENSSSCP00015041908	97.4542	97.4542
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_pietrain	ENSSSCP00055014677	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	99.9478	sus_scrofa_hampshire	ENSSSCP00035026673	100	99.9478
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_berkshire	ENSSSCP00065021883	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_meishan	ENSSSCP00040038531	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	100	100	sus_scrofa_rongchang	ENSSSCP00030041857	100	100
ENSSSCG00050078541	sus_scrofa_bamei	ENSSSCP00050047997	97.7023	96.5535	ovis_aries_rambouillet	ENSOARP00020032919	95.9487	94.8205

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression