RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050076600	Gene ID	100158153	Accession	-
Symbol	NOC3L	Alias	-	Full Name	NOC3 like DNA replication regulator
Status	Confidence	Length	36460 bases	Strand	Minus strand
Position	LUXV01113340.1 : 2810737 - 2847196	RNA binding domain	NOC3p , CBF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050046302	NOC3p	PF07540	3.9e-29	1
ENSSSCP00050046302	CBF	PF03914	1.7e-29	2
ENSSSCP00050046301	NOC3p	PF07540	4.2e-29	1
ENSSSCP00050046301	CBF	PF03914	1.9e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
NOC3L-201	ENSSSCT00050105281	4220	799aa	ENSSSCP00050046301
NOC3L-202	ENSSSCT00050105285	4091	756aa	ENSSSCP00050046302

Gene Model

Click here to download ENSSSCG00050076600's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050076600's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050076600

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_usmarc	ENSSSCP00070031628	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa	ENSSSCP00000024314	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_largewhite	ENSSSCP00025000581	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	97.622	95.2441	equus_caballus	ENSECAP00000088462	93.75	91.4663
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	98.1227	95.8698	bos_taurus	ENSBTAP00000068094	98.1227	95.8698
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_wuzhishan	ENSSSCP00005018014	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	99.7497	99.7497	sus_scrofa_jinhua	ENSSSCP00060017644	99.7497	99.7497
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_landrace	ENSSSCP00045003251	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	65.4568	65.4568	sus_scrofa_tibetan	ENSSSCP00015028145	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_pietrain	ENSSSCP00055046968	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_hampshire	ENSSSCP00035012792	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_berkshire	ENSSSCP00065046038	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_meishan	ENSSSCP00040008665	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	100	100	sus_scrofa_rongchang	ENSSSCP00030031091	100	100
ENSSSCG00050076600	sus_scrofa_bamei	ENSSSCP00050046301	97.4969	95.2441	ovis_aries_rambouillet	ENSOARP00020023283	97.4969	95.2441

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression