RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050075307	Gene ID		Accession	-
Symbol	MRI1	Alias	-	Full Name	NA
Status	Confidence	Length	21188 bases	Strand	Plus strand
Position	LUXV01095137.1 : 1436619 - 1457806	RNA binding domain	IF-2B
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050045079	IF-2B	PF01008	1.9e-77	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRI1-201	ENSSSCT00050103212	4290	397aa	ENSSSCP00050045079

Gene Model

Click here to download ENSSSCG00050075307's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050075307's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050038288	35.3276	18.5185	sus_scrofa_bamei	ENSSSCP00050045079	31.2343	16.3728
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050032169	24.9541	13.578	sus_scrofa_bamei	ENSSSCP00050045079	34.2569	18.6398
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050038924	40.6557	22.623	sus_scrofa_bamei	ENSSSCP00050045079	31.2343	17.3804
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050028418	39.5349	22.4806	sus_scrofa_bamei	ENSSSCP00050045079	25.6927	14.6096

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa	ENSSSCP00000014625	100	100
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	99.7481	99.7481	sus_scrofa_largewhite	ENSSSCP00025028725	93.8389	93.8389
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	88.9169	85.1385	bos_taurus	ENSBTAP00000003273	89.3671	85.5696
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	89.9244	89.9244	sus_scrofa_wuzhishan	ENSSSCP00005040135	99.7207	99.7207
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_jinhua	ENSSSCP00060048540	100	100
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_landrace	ENSSSCP00045017299	94.0758	94.0758
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_tibetan	ENSSSCP00015036344	94.0758	94.0758
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_pietrain	ENSSSCP00055016000	94.0758	94.0758
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	99.7481	sus_scrofa_hampshire	ENSSSCP00035041750	94.0758	93.8389
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_berkshire	ENSSSCP00065003308	94.0758	94.0758
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_meishan	ENSSSCP00040048371	100	100
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	100	100	sus_scrofa_rongchang	ENSSSCP00030012539	100	100
ENSSSCG00050075307	sus_scrofa_bamei	ENSSSCP00050045079	87.9093	84.8867	ovis_aries_rambouillet	ENSOARP00020002093	95.0954	91.8256

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression