RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050074232	Gene ID		Accession	-
Symbol	RPS17	Alias	-	Full Name	40S ribosomal protein S17
Status	Confidence	Length	4592 bases	Strand	Plus strand
Position	LUXV01098138.1 : 4352172 - 4356763	RNA binding domain	Ribosomal_S17e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050044228	Ribosomal_S17e	PF00833	2.5e-67	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS17-201	ENSSSCT00050101614	2107	135aa	ENSSSCP00050044228

Gene Model

Click here to download ENSSSCG00050074232's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050074232's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050029156	97.037	97.037	sus_scrofa_bamei	ENSSSCP00050044228	97.037	97.037
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050017346	79.3893	74.0458	sus_scrofa_bamei	ENSSSCP00050044228	77.037	71.8519

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	99.2593	99.2593	sus_scrofa_usmarc	ENSSSCP00070029420	99.2593	99.2593
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	100	sus_scrofa	ENSSSCP00000020253	100	100
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	86.6667	84.4444	equus_caballus	ENSECAP00000022453	92.126	89.7638
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	100	equus_caballus	ENSECAP00000087824	100	100
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	100	bos_taurus	ENSBTAP00000000814	65.8537	65.8537
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	99.2593	sus_scrofa_wuzhishan	ENSSSCP00005014898	100	99.2593
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	100	sus_scrofa_tibetan	ENSSSCP00015045495	100	100
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	100	100	sus_scrofa_hampshire	ENSSSCP00035030240	100	100
ENSSSCG00050074232	sus_scrofa_bamei	ENSSSCP00050044228	91.1111	89.6296	ovis_aries_rambouillet	ENSOARP00020015702	90.4412	88.9706

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression