RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050072368	Gene ID		Accession	-
Symbol	LSM14B	Alias	-	Full Name	NA
Status	Confidence	Length	11655 bases	Strand	Plus strand
Position	LUXV01118366.1 : 1606823 - 1618477	RNA binding domain	LSM14 , SM-ATX , FDF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050042703	LSM14	PF12701	2.8e-30	1
ENSSSCP00050042703	SM-ATX	PF14438	1.5e-08	2
ENSSSCP00050042704	LSM14	PF12701	7e-30	1
ENSSSCP00050042704	SM-ATX	PF14438	4.4e-08	2
ENSSSCP00050042704	FDF	PF09532	2.2e-25	3
ENSSSCP00050042702	LSM14	PF12701	7.9e-30	1
ENSSSCP00050042702	SM-ATX	PF14438	4.4e-08	2
ENSSSCP00050042702	FDF	PF09532	2.6e-25	3
ENSSSCP00050042699	LSM14	PF12701	6.7e-12	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LSM14B-201	ENSSSCT00050098793	1550	242aa	ENSSSCP00050042699
LSM14B-203	ENSSSCT00050098798	2551	424aa	ENSSSCP00050042702
LSM14B-202	ENSSSCT00050098801	825	221aa	ENSSSCP00050042703
LSM14B-204	ENSSSCT00050098802	2392	385aa	ENSSSCP00050042704

Gene Model

Click here to download ENSSSCG00050072368's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050072368's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050030069	58.9633	49.2441	sus_scrofa_bamei	ENSSSCP00050042702	64.3868	53.7736

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	84.434	80.8962	sus_scrofa_usmarc	ENSSSCP00070033496	48.0537	46.0403
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa	ENSSSCP00000053189	100	100
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_largewhite	ENSSSCP00025040674	100	100
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	94.8113	93.1604	equus_caballus	ENSECAP00000035118	94.8113	93.1604
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	94.5755	92.217	bos_taurus	ENSBTAP00000028723	94.5755	92.217
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	31.1321	25.7075	bos_taurus	ENSBTAP00000057304	60	49.5455
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	24.0566	19.5755	sus_scrofa_wuzhishan	ENSSSCP00005033378	51.5152	41.9192
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	83.7264	82.0755	sus_scrofa_jinhua	ENSSSCP00060016357	74.4235	72.956
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_landrace	ENSSSCP00045000911	84.4622	84.4622
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_pietrain	ENSSSCP00055010611	100	100
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_hampshire	ENSSSCP00035002384	100	100
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_berkshire	ENSSSCP00065012684	84.4622	84.4622
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_meishan	ENSSSCP00040006674	100	100
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	100	100	sus_scrofa_rongchang	ENSSSCP00030018515	84.4622	84.4622
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	45.283	42.217	ovis_aries_rambouillet	ENSOARP00020031763	83.4783	77.8261
ENSSSCG00050072368	sus_scrofa_bamei	ENSSSCP00050042702	86.0849	84.434	ovis_aries_rambouillet	ENSOARP00020009041	94.8052	92.987

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression