| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00050066886 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
13032 bases |
Strand |
Minus strand |
| Position |
LUXV01069975.1 : 1667205 - 1680236 |
RNA binding domain |
LsmAD , PAM2 , SM-ATX |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00050039193 |
LsmAD |
PF06741 |
5.3e-17 |
1 |
| ENSSSCP00050039193 |
PAM2 |
PF07145 |
2.3e-05 |
2 |
| ENSSSCP00050039188 |
LsmAD |
PF06741 |
5.5e-17 |
1 |
| ENSSSCP00050039188 |
PAM2 |
PF07145 |
2.2e-05 |
2 |
| ENSSSCP00050039188 |
SM-ATX |
PF14438 |
3e-17 |
3 |
| ENSSSCP00050039218 |
LsmAD |
PF06741 |
5.5e-17 |
1 |
| ENSSSCP00050039218 |
PAM2 |
PF07145 |
2.1e-05 |
2 |
| ENSSSCP00050039218 |
SM-ATX |
PF14438 |
2.9e-17 |
3 |
| ENSSSCP00050039187 |
LsmAD |
PF06741 |
6e-17 |
1 |
| ENSSSCP00050039187 |
PAM2 |
PF07145 |
2.3e-05 |
2 |
| ENSSSCP00050039187 |
SM-ATX |
PF14438 |
3.2e-17 |
3 |
| ENSSSCP00050039207 |
LsmAD |
PF06741 |
6e-17 |
1 |
| ENSSSCP00050039207 |
PAM2 |
PF07145 |
2.3e-05 |
2 |
| ENSSSCP00050039207 |
SM-ATX |
PF14438 |
7.2e-19 |
3 |
| ENSSSCP00050039211 |
LsmAD |
PF06741 |
6.2e-17 |
1 |
| ENSSSCP00050039211 |
PAM2 |
PF07145 |
2.3e-05 |
2 |
| ENSSSCP00050039211 |
SM-ATX |
PF14438 |
7.4e-19 |
3 |
| ENSSSCP00050039186 |
LsmAD |
PF06741 |
6.3e-17 |
1 |
| ENSSSCP00050039186 |
PAM2 |
PF07145 |
2.5e-05 |
2 |
| ENSSSCP00050039186 |
SM-ATX |
PF14438 |
7.7e-19 |
3 |
| ENSSSCP00050039201 |
LsmAD |
PF06741 |
7.1e-17 |
1 |
| ENSSSCP00050039201 |
PAM2 |
PF07145 |
2.7e-05 |
2 |
| ENSSSCP00050039201 |
SM-ATX |
PF14438 |
8.4e-19 |
3 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSSSCT00050091170 |
3896 |
1016aa |
ENSSSCP00050039186 |
| - |
ENSSSCT00050091173 |
4696 |
984aa |
ENSSSCP00050039187 |
| - |
ENSSSCT00050091175 |
4522 |
926aa |
ENSSSCP00050039188 |
| - |
ENSSSCT00050091183 |
5303 |
927aa |
ENSSSCP00050039193 |
| - |
ENSSSCT00050091197 |
4293 |
1107aa |
ENSSSCP00050039201 |
| - |
ENSSSCT00050091205 |
3630 |
992aa |
ENSSSCP00050039207 |
| - |
ENSSSCT00050091211 |
4321 |
989aa |
ENSSSCP00050039211 |
| - |
ENSSSCT00050091220 |
4956 |
934aa |
ENSSSCP00050039218 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050001657 | 46.7997 | 33.8321 | sus_scrofa_bamei | ENSSSCP00050039201 | 50.8582 | 36.766 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.5863 | 93.4056 | sus_scrofa_usmarc | ENSSSCP00070026551 | 96.1039 | 95.9184 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.5863 | 93.4056 | sus_scrofa | ENSSSCP00000043547 | 95.9259 | 95.7407 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 99.729 | 99.729 | sus_scrofa_largewhite | ENSSSCP00025042487 | 99.729 | 99.729 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 91.4183 | 90.6052 | equus_caballus | ENSECAP00000076766 | 93.7906 | 92.9564 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.9476 | 93.1346 | bos_taurus | ENSBTAP00000056890 | 94.5455 | 93.7273 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 79.4941 | 79.2231 | sus_scrofa_wuzhishan | ENSSSCP00005045806 | 81.4061 | 81.1286 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 96.748 | 96.748 | sus_scrofa_jinhua | ENSSSCP00060007694 | 99.7207 | 99.7207 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.5863 | 93.4056 | sus_scrofa_landrace | ENSSSCP00045045530 | 95.9259 | 95.7407 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 99.8193 | 99.8193 | sus_scrofa_tibetan | ENSSSCP00015026985 | 99.2812 | 99.2812 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 99.9097 | 99.9097 | sus_scrofa_pietrain | ENSSSCP00055049084 | 99.9097 | 99.9097 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 97.1093 | 97.1093 | sus_scrofa_hampshire | ENSSSCP00035038128 | 94.9647 | 94.9647 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 99.9097 | 99.9097 | sus_scrofa_berkshire | ENSSSCP00065023614 | 99.9097 | 99.9097 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 99.9097 | 99.9097 | sus_scrofa_meishan | ENSSSCP00040032587 | 99.9097 | 99.9097 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.7669 | 93.4056 | sus_scrofa_rongchang | ENSSSCP00030048500 | 94.4495 | 94.0855 |
| ENSSSCG00050066886 | sus_scrofa_bamei | ENSSSCP00050039201 | 93.7669 | 92.9539 | ovis_aries_rambouillet | ENSOARP00020033941 | 94.708 | 93.8869 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
