RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050066489	Gene ID		Accession	-
Symbol	EIF2B1	Alias	-	Full Name	NA
Status	Confidence	Length	35496 bases	Strand	Plus strand
Position	LUXV01104067.1 : 1498448 - 1533943	RNA binding domain	IF-2B
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050038924	IF-2B	PF01008	4.4e-80	1
ENSSSCP00050038933	IF-2B	PF01008	1.2e-37	1
ENSSSCP00050038926	IF-2B	PF01008	2.5e-28	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EIF2B1-202	ENSSSCT00050090594	2217	305aa	ENSSSCP00050038924
EIF2B1-201	ENSSSCT00050090596	1415	224aa	ENSSSCP00050038926
EIF2B1-203	ENSSSCT00050090605	2031	215aa	ENSSSCP00050038933

Gene Model

Click here to download ENSSSCG00050066489's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050066489's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050028418	87.9845	83.7209	sus_scrofa_bamei	ENSSSCP00050038924	74.4262	70.8197
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038288	34.7578	20.7977	sus_scrofa_bamei	ENSSSCP00050038924	40	23.9344
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050032169	26.422	14.1284	sus_scrofa_bamei	ENSSSCP00050038924	47.2131	25.2459
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050045079	31.2343	17.3804	sus_scrofa_bamei	ENSSSCP00050038924	40.6557	22.623

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	95.7377	95.7377	sus_scrofa_usmarc	ENSSSCP00070029106	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa	ENSSSCP00000031641	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	99.6721	99.6721	sus_scrofa_largewhite	ENSSSCP00025008841	99.6721	99.6721
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	97.7049	95.7377	equus_caballus	ENSECAP00000018924	97.7049	95.7377
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	98.6885	96.7213	bos_taurus	ENSBTAP00000009560	98.6885	96.7213
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	95.7377	95.7377	sus_scrofa_wuzhishan	ENSSSCP00005014473	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_jinhua	ENSSSCP00060004738	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_landrace	ENSSSCP00045048443	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	99.6721	sus_scrofa_tibetan	ENSSSCP00015020594	100	99.6721
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_pietrain	ENSSSCP00055003822	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_hampshire	ENSSSCP00035020629	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_meishan	ENSSSCP00040039623	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	100	100	sus_scrofa_rongchang	ENSSSCP00030002641	100	100
ENSSSCG00050066489	sus_scrofa_bamei	ENSSSCP00050038924	99.0164	97.0492	ovis_aries_rambouillet	ENSOARP00020007865	99.0164	97.0492

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression