RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050059455	Gene ID		Accession	-
Symbol	FARSA	Alias	-	Full Name	NA
Status	Confidence	Length	12772 bases	Strand	Minus strand
Position	LUXV01095137.1 : 687315 - 700086	RNA binding domain	PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050034763	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00050034763	PheRS_DBD3	PF18553	4.2e-21	2
ENSSSCP00050034763	tRNA-synt_2d	PF01409	1e-53	3
ENSSSCP00050034768	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00050034768	tRNA-synt_2d	PF01409	1.6e-91	2
ENSSSCP00050034765	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00050034765	PheRS_DBD3	PF18553	2.4e-21	2
ENSSSCP00050034765	tRNA-synt_2d	PF01409	1.6e-91	3
ENSSSCP00050034764	PheRS_DBD1	PF18552	2.8e-22	1
ENSSSCP00050034764	PheRS_DBD3	PF18553	3.4e-21	2
ENSSSCP00050034764	tRNA-synt_2d	PF01409	1.8e-91	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FARSA-201	ENSSSCT00050080987	5701	479aa	ENSSSCP00050034763
FARSA-202	ENSSSCT00050080989	5610	508aa	ENSSSCP00050034764
FARSA-203	ENSSSCT00050080991	5517	477aa	ENSSSCP00050034765
FARSA-204	ENSSSCT00050080997	1684	475aa	ENSSSCP00050034768

Gene Model

Click here to download ENSSSCG00050059455's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050059455's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050013086	22.56	11.04	sus_scrofa_bamei	ENSSSCP00050034764	27.7559	13.5827
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050037952	32.8421	19.7895	sus_scrofa_bamei	ENSSSCP00050034764	30.7087	18.5039

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa_usmarc	ENSSSCP00070013554	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa	ENSSSCP00000014614	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	85.2362	83.2677	sus_scrofa_largewhite	ENSSSCP00025036939	83.4297	81.5029
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	97.6378	94.4882	equus_caballus	ENSECAP00000089849	92.5373	89.5522
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	97.8346	95.0787	bos_taurus	ENSBTAP00000028494	97.8346	95.0787
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	92.126	91.1417	sus_scrofa_wuzhishan	ENSSSCP00005031446	93.7876	92.7856
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa_jinhua	ENSSSCP00060006719	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	85.0394	83.0709	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa_tibetan	ENSSSCP00015024007	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa_pietrain	ENSSSCP00055035781	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	100	100	sus_scrofa_hampshire	ENSSSCP00035024228	100	100
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	94.0945	93.1102	sus_scrofa_berkshire	ENSSSCP00065011613	87.8676	86.9485
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	85.2362	83.2677	sus_scrofa_meishan	ENSSSCP00040007462	83.4297	81.5029
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	85.2362	83.2677	sus_scrofa_rongchang	ENSSSCP00030005290	83.4297	81.5029
ENSSSCG00050059455	sus_scrofa_bamei	ENSSSCP00050034764	98.2283	95.2756	ovis_aries_rambouillet	ENSOARP00020012731	98.2283	95.2756

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression