RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050059050	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	46154 bases	Strand	Plus strand
Position	LUXV01116358.1 : 1715538 - 1761691	RNA binding domain	TAF1_subA
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050034565	TAF1_subA	PF14929	1.1e-127	1
ENSSSCP00050034566	TAF1_subA	PF14929	7e-126	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050080471	3380	477aa	ENSSSCP00050034565
-	ENSSSCT00050080474	6006	415aa	ENSSSCP00050034566

Gene Model

Click here to download ENSSSCG00050059050's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050059050's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050059050

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	94.13	94.13	sus_scrofa_usmarc	ENSSSCP00070016696	92.9607	92.9607
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	94.13	94.13	sus_scrofa	ENSSSCP00000042983	99.7778	99.7778
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	100	100	sus_scrofa_largewhite	ENSSSCP00025012646	100	100
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	40.8805	37.7358	equus_caballus	ENSECAP00000075222	90.6977	83.7209
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	89.5178	83.4382	equus_caballus	ENSECAP00000005845	94.0529	87.6652
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	89.7275	82.8092	bos_taurus	ENSBTAP00000017928	95.1111	87.7778
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	94.13	94.13	sus_scrofa_wuzhishan	ENSSSCP00005013377	99.7778	99.7778
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	100	100	sus_scrofa_jinhua	ENSSSCP00060001255	100	100
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	94.13	94.13	sus_scrofa_meishan	ENSSSCP00040007348	92.9607	92.9607
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	99.7904	99.7904	sus_scrofa_rongchang	ENSSSCP00030017796	99.7904	99.7904
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	89.3082	82.3899	ovis_aries_rambouillet	ENSOARP00020014638	94.2478	86.9469
ENSSSCG00050059050	sus_scrofa_bamei	ENSSSCP00050034565	51.5723	45.7023	ovis_aries_rambouillet	ENSOARP00020015351	91.4498	81.0409

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression