| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00050057122 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
250999 bases |
Strand |
Minus strand |
| Position |
LUXV01110801.1 : 1544992 - 1795990 |
RNA binding domain |
TNRC6-PABC_bdg , Ago_hook |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00050033534 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033534 |
Ago_hook |
PF10427 |
2.1e-18 |
2 |
| ENSSSCP00050033502 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033544 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033544 |
Ago_hook |
PF10427 |
2.1e-18 |
2 |
| ENSSSCP00050033527 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033527 |
Ago_hook |
PF10427 |
2.3e-18 |
2 |
| ENSSSCP00050033497 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033497 |
Ago_hook |
PF10427 |
2.2e-18 |
2 |
| ENSSSCP00050033520 |
TNRC6-PABC_bdg |
PF16608 |
1.1e-104 |
1 |
| ENSSSCP00050033520 |
Ago_hook |
PF10427 |
2.2e-18 |
2 |
| ENSSSCP00050033505 |
TNRC6-PABC_bdg |
PF16608 |
1.2e-104 |
1 |
| ENSSSCP00050033505 |
Ago_hook |
PF10427 |
2.3e-18 |
2 |
| ENSSSCP00050033519 |
TNRC6-PABC_bdg |
PF16608 |
1.2e-104 |
1 |
| ENSSSCP00050033519 |
Ago_hook |
PF10427 |
2.5e-18 |
2 |
| ENSSSCP00050033515 |
TNRC6-PABC_bdg |
PF16608 |
1.2e-104 |
1 |
| ENSSSCP00050033515 |
Ago_hook |
PF10427 |
2.4e-18 |
2 |
| ENSSSCP00050033500 |
TNRC6-PABC_bdg |
PF16608 |
5e-84 |
1 |
| ENSSSCP00050033500 |
Ago_hook |
PF10427 |
1.7e-18 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSSSCT00050077871 |
5862 |
1775aa |
ENSSSCP00050033497 |
| - |
ENSSSCT00050077886 |
5724 |
1729aa |
ENSSSCP00050033500 |
| - |
ENSSSCT00050077892 |
5703 |
1722aa |
ENSSSCP00050033502 |
| - |
ENSSSCT00050077898 |
6293 |
1832aa |
ENSSSCP00050033505 |
| - |
ENSSSCT00050077920 |
6533 |
1868aa |
ENSSSCP00050033515 |
| - |
ENSSSCT00050077932 |
6197 |
1855aa |
ENSSSCP00050033519 |
| - |
ENSSSCT00050077935 |
6023 |
1785aa |
ENSSSCP00050033520 |
| - |
ENSSSCT00050077950 |
6551 |
1763aa |
ENSSSCP00050033527 |
| - |
ENSSSCT00050077966 |
6425 |
1721aa |
ENSSSCP00050033534 |
| - |
ENSSSCT00050077993 |
5742 |
1749aa |
ENSSSCP00050033544 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050047997 | 51.1749 | 37.8068 | sus_scrofa_bamei | ENSSSCP00050033515 | 52.4625 | 38.758 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050030082 | 49.5914 | 36.8233 | sus_scrofa_bamei | ENSSSCP00050033515 | 51.9807 | 38.5974 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050041628 | 31.6929 | 13.5827 | sus_scrofa_bamei | ENSSSCP00050033515 | 8.61884 | 3.69379 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050007393 | 32.5228 | 13.6778 | sus_scrofa_bamei | ENSSSCP00050033515 | 5.72805 | 2.40899 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 99.9465 | 99.9465 | sus_scrofa_usmarc | ENSSSCP00070047815 | 99.9465 | 99.9465 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 97.9657 | 97.9122 | sus_scrofa | ENSSSCP00000032960 | 99.8908 | 99.8362 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.8951 | 96.8951 | sus_scrofa_largewhite | ENSSSCP00025015824 | 97.5741 | 97.5741 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 95.6103 | 95.2355 | equus_caballus | ENSECAP00000008008 | 95.2533 | 94.88 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.3062 | 95.0214 | bos_taurus | ENSBTAP00000028072 | 98.0381 | 96.7302 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 99.9465 | 99.9465 | sus_scrofa_wuzhishan | ENSSSCP00005005672 | 96.987 | 96.987 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.9486 | 96.9486 | sus_scrofa_jinhua | ENSSSCP00060029759 | 97.628 | 97.628 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.8951 | 96.8951 | sus_scrofa_landrace | ENSSSCP00045032740 | 97.5741 | 97.5741 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 100 | 100 | sus_scrofa_tibetan | ENSSSCP00015035259 | 99.6798 | 99.6798 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.8951 | 96.8951 | sus_scrofa_pietrain | ENSSSCP00055048778 | 97.5741 | 97.5741 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 99.9465 | 99.9465 | sus_scrofa_hampshire | ENSSSCP00035046856 | 96.987 | 96.987 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065006608 | 97.039 | 97.039 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 94.8073 | 94.7537 | sus_scrofa_meishan | ENSSSCP00040012073 | 96.6703 | 96.6157 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 96.8951 | 96.8951 | sus_scrofa_rongchang | ENSSSCP00030003122 | 97.5741 | 97.5741 |
| ENSSSCG00050057122 | sus_scrofa_bamei | ENSSSCP00050033515 | 92.6124 | 91.6488 | ovis_aries_rambouillet | ENSOARP00020030480 | 97.9615 | 96.9422 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
