RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050051371	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	87852 bases	Strand	Minus strand
Position	LUXV01015112.1 : 2513936 - 2601787	RNA binding domain	TNRC6-PABC_bdg , Ago_hook
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050030082	TNRC6-PABC_bdg	PF16608	1.5e-119	1
ENSSSCP00050030082	Ago_hook	PF10427	1.2e-19	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050069966	7825	1958aa	ENSSSCP00050030082

Gene Model

Click here to download ENSSSCG00050051371's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050051371's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050047997	56.188	43.8642	sus_scrofa_bamei	ENSSSCP00050030082	54.954	42.9009
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050041628	33.6614	14.9606	sus_scrofa_bamei	ENSSSCP00050030082	8.7334	3.88151
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050033515	51.9807	38.5974	sus_scrofa_bamei	ENSSSCP00050030082	49.5914	36.8233
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050007393	38.2979	19.4529	sus_scrofa_bamei	ENSSSCP00050030082	6.43514	3.26864

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	96.2206	96.0163	sus_scrofa_usmarc	ENSSSCP00070032270	99.3671	99.1561
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.8958	87.8958	sus_scrofa	ENSSSCP00000038345	99.9419	99.9419
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	84.7293	84.7293	sus_scrofa_largewhite	ENSSSCP00025031227	99.8195	99.8195
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	89.8876	85.24	equus_caballus	ENSECAP00000045919	89.8418	85.1965
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	90.1941	85.9551	bos_taurus	ENSBTAP00000053234	91.4552	87.1569
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	93.8713	93.8713	sus_scrofa_wuzhishan	ENSSSCP00005001058	95.0362	95.0362
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.8958	87.8958	sus_scrofa_jinhua	ENSSSCP00060030582	99.9419	99.9419
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.8447	87.8447	sus_scrofa_landrace	ENSSSCP00045040680	99.8839	99.8839
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.8958	87.8958	sus_scrofa_tibetan	ENSSSCP00015020751	99.9419	99.9419
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.9469	87.9469	sus_scrofa_pietrain	ENSSSCP00055010913	100	100
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	87.9469	87.9469	sus_scrofa_hampshire	ENSSSCP00035022818	100	100
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	99.9489	99.9489	sus_scrofa_berkshire	ENSSSCP00065002112	99.9489	99.9489
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	98.57	98.57	sus_scrofa_meishan	ENSSSCP00040001429	99.2288	99.2288
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	99.8468	99.7446	sus_scrofa_rongchang	ENSSSCP00030005548	99.8468	99.7446
ENSSSCG00050051371	sus_scrofa_bamei	ENSSSCP00050030082	90.8069	86.3636	ovis_aries_rambouillet	ENSOARP00020022741	91.6968	87.2099

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression