RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050051360	Gene ID	100511455	Accession	-
Symbol	LSM14A	Alias	-	Full Name	LSM14A mRNA processing body assembly factor
Status	Confidence	Length	56080 bases	Strand	Minus strand
Position	LUXV01059070.1 : 404221 - 460300	RNA binding domain	LSM14 , SM-ATX , FDF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050030075	LSM14	PF12701	4e-32	1
ENSSSCP00050030075	SM-ATX	PF14438	3.8e-08	2
ENSSSCP00050030075	FDF	PF09532	3.2e-31	3
ENSSSCP00050030069	LSM14	PF12701	5.3e-32	1
ENSSSCP00050030069	SM-ATX	PF14438	4.7e-08	2
ENSSSCP00050030069	FDF	PF09532	4e-31	3
ENSSSCP00050030071	LSM14	PF12701	5.8e-32	1
ENSSSCP00050030071	SM-ATX	PF14438	4.3e-08	2
ENSSSCP00050030071	FDF	PF09532	3.4e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
LSM14A-201	ENSSSCT00050069934	3274	463aa	ENSSSCP00050030069
LSM14A-202	ENSSSCT00050069938	3151	422aa	ENSSSCP00050030071
LSM14A-203	ENSSSCT00050069946	3175	404aa	ENSSSCP00050030075

Gene Model

Click here to download ENSSSCG00050051360's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050051360's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050042702	64.3868	53.7736	sus_scrofa_bamei	ENSSSCP00050030069	58.9633	49.2441

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa	ENSSSCP00000055827	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_largewhite	ENSSSCP00025020907	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	98.0562	96.9762	equus_caballus	ENSECAP00000042711	83.3027	82.3853
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	97.6242	95.8963	bos_taurus	ENSBTAP00000059201	95.3587	93.6709
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	92.6566	92.0086	sus_scrofa_wuzhishan	ENSSSCP00005028148	98.3945	97.7064
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_jinhua	ENSSSCP00060022924	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	92.6566	92.0086	sus_scrofa_landrace	ENSSSCP00045022325	98.3945	97.7064
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_tibetan	ENSSSCP00015029286	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_pietrain	ENSSSCP00055030892	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_hampshire	ENSSSCP00035047097	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_berkshire	ENSSSCP00065031702	100	100
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	92.6566	92.0086	sus_scrofa_meishan	ENSSSCP00040039478	98.3945	97.7064
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	100	100	sus_scrofa_rongchang	ENSSSCP00030012382	99.1435	99.1435
ENSSSCG00050051360	sus_scrofa_bamei	ENSSSCP00050030069	98.2721	97.4082	ovis_aries_rambouillet	ENSOARP00020015445	98.2721	97.4082

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression