RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050050956	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	101147 bases	Strand	Plus strand
Position	LUXV01115941.1 : 480556 - 581702	RNA binding domain	Exo_endo_phos , DUF1866
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050029815	Exo_endo_phos	PF03372	1.2e-12	1
ENSSSCP00050029815	DUF1866	PF08952	1e-57	2
ENSSSCP00050029835	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00050029835	DUF1866	PF08952	1.1e-57	2
ENSSSCP00050029832	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00050029832	DUF1866	PF08952	1.1e-57	2
ENSSSCP00050029824	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00050029824	DUF1866	PF08952	1.1e-57	2
ENSSSCP00050029828	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00050029828	DUF1866	PF08952	1.1e-57	2
ENSSSCP00050029821	Exo_endo_phos	PF03372	1.7e-12	1
ENSSSCP00050029821	DUF1866	PF08952	1.2e-57	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050069391	7126	1285aa	ENSSSCP00050029815
-	ENSSSCT00050069398	7078	1534aa	ENSSSCP00050029821
-	ENSSSCT00050069403	7217	1319aa	ENSSSCP00050029824
-	ENSSSCT00050069413	7862	1325aa	ENSSSCP00050029828
-	ENSSSCT00050069417	4097	1308aa	ENSSSCP00050029832
-	ENSSSCT00050069425	7175	1303aa	ENSSSCP00050029835

Gene Model

Click here to download ENSSSCG00050050956's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050050956's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050016115	29.027	16.6803	sus_scrofa_bamei	ENSSSCP00050029821	23.1421	13.2986
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050015764	35.1598	21.7656	sus_scrofa_bamei	ENSSSCP00050029821	15.0587	9.32203
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050037123	29.6875	16.4062	sus_scrofa_bamei	ENSSSCP00050029821	2.47718	1.36897
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050036422	33.8346	20.3008	sus_scrofa_bamei	ENSSSCP00050029821	2.93351	1.7601
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050010684	61.8403	45.7375	sus_scrofa_bamei	ENSSSCP00050029821	59.5828	44.0678
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050027391	30.859	17.8482	sus_scrofa_bamei	ENSSSCP00050029821	24.1199	13.9505
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050036576	46.4765	26.6779	sus_scrofa_bamei	ENSSSCP00050029821	18.0574	10.3651
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050008214	36.0656	19.7814	sus_scrofa_bamei	ENSSSCP00050029821	21.5124	11.7992
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050009338	36.6284	19.8588	sus_scrofa_bamei	ENSSSCP00050029821	27.0535	14.6675
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050006495	33.5556	21.4444	sus_scrofa_bamei	ENSSSCP00050029821	19.6871	12.5815
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050008438	38.4615	24.1164	sus_scrofa_bamei	ENSSSCP00050029821	12.06	7.56193
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050034163	34.6112	21.2486	sus_scrofa_bamei	ENSSSCP00050029821	20.5997	12.6467
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050046597	28.7992	16.9794	sus_scrofa_bamei	ENSSSCP00050029821	20.013	11.7992

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	83.7027	82.7249	sus_scrofa_usmarc	ENSSSCP00070022696	93.1785	92.09
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.9348	99.8044	sus_scrofa	ENSSSCP00000051758	98.2692	98.141
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6741	sus_scrofa_largewhite	ENSSSCP00025013720	97.1447	97.0178
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	94.133	91.5254	equus_caballus	ENSECAP00000039406	90.8176	88.3019
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	94.2634	92.3077	bos_taurus	ENSBTAP00000072073	91.577	89.677
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	79.3351	78.8787	sus_scrofa_wuzhishan	ENSSSCP00005025551	94.1222	93.5808
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6089	sus_scrofa_jinhua	ENSSSCP00060019933	97.1447	96.9543
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6741	sus_scrofa_landrace	ENSSSCP00045027169	97.1447	97.0178
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8696	99.7392	sus_scrofa_tibetan	ENSSSCP00015029752	99.8696	99.7392
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6741	sus_scrofa_pietrain	ENSSSCP00055030485	97.1447	97.0178
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6741	sus_scrofa_hampshire	ENSSSCP00035017232	99.8044	99.6741
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8044	99.6741	sus_scrofa_berkshire	ENSSSCP00065041791	97.1447	97.0178
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8696	99.7392	sus_scrofa_meishan	ENSSSCP00040033225	97.2081	97.0812
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	99.8696	99.7392	sus_scrofa_rongchang	ENSSSCP00030006363	99.8696	99.7392
ENSSSCG00050050956	sus_scrofa_bamei	ENSSSCP00050029821	94.3286	92.1773	ovis_aries_rambouillet	ENSOARP00020001111	90.0996	88.0448

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression