RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050048465	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1112 bases	Strand	Minus strand
Position	LUXV01108592.1 : 1386800 - 1387911	RNA binding domain	IF-2B
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050028418	IF-2B	PF01008	7.6e-57	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050066017	777	258aa	ENSSSCP00050028418

Gene Model

Click here to download ENSSSCG00050048465's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050048465's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050038924	74.4262	70.8197	sus_scrofa_bamei	ENSSSCP00050028418	87.9845	83.7209
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050038288	27.3504	17.3789	sus_scrofa_bamei	ENSSSCP00050028418	37.2093	23.6434
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050032169	21.4679	11.7431	sus_scrofa_bamei	ENSSSCP00050028418	45.3488	24.8062
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050045079	25.6927	14.6096	sus_scrofa_bamei	ENSSSCP00050028418	39.5349	22.4806

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	77.907	77.1318	sus_scrofa	ENSSSCP00000078191	94.3662	93.4272
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	85.6589	79.845	equus_caballus	ENSECAP00000018924	72.459	67.541
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	87.2093	81.0078	bos_taurus	ENSBTAP00000009560	73.7705	68.5246
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	99.6124	99.6124	sus_scrofa_jinhua	ENSSSCP00060035931	99.6124	99.6124
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	82.1705	80.2326	sus_scrofa_tibetan	ENSSSCP00015024592	90.5983	88.4615
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	100	99.6124	sus_scrofa_berkshire	ENSSSCP00065003380	100	99.6124
ENSSSCG00050048465	sus_scrofa_bamei	ENSSSCP00050028418	87.2093	81.0078	ovis_aries_rambouillet	ENSOARP00020007865	73.7705	68.5246

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression