RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00050047251	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	24111 bases	Strand	Minus strand
Position	LUXV01063678.1 : 72896 - 97006	RNA binding domain	CBF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050027739	CBF	PF03914	5e-54	1
ENSSSCP00050027728	CBF	PF03914	5e-54	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050064368	3461	983aa	ENSSSCP00050027728
-	ENSSSCT00050064379	4421	981aa	ENSSSCP00050027739

Gene Model

Click here to download ENSSSCG00050047251's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050047251's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050047251

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.1862	99.0844	sus_scrofa_usmarc	ENSSSCP00070009534	92.9457	92.8503
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.3896	99.0844	sus_scrofa	ENSSSCP00000009059	93.1363	92.8503
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.0997	93.8962	sus_scrofa_largewhite	ENSSSCP00025032940	92.6854	92.485
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.2014	90.4374	equus_caballus	ENSECAP00000058329	91.2315	87.5862
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	95.117	91.1495	bos_taurus	ENSBTAP00000050307	88.2076	84.5283
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.4914	99.3896	sus_scrofa_wuzhishan	ENSSSCP00005033872	93.2317	93.1363
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.3032	94.0997	sus_scrofa_jinhua	ENSSSCP00060036916	92.8858	92.6854
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.0997	93.8962	sus_scrofa_landrace	ENSSSCP00045001845	92.6854	92.485
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.3896	99.1862	sus_scrofa_tibetan	ENSSSCP00015009326	93.1363	92.9457
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.0997	93.8962	sus_scrofa_pietrain	ENSSSCP00055015299	92.6854	92.485
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.0997	93.8962	sus_scrofa_hampshire	ENSSSCP00035025477	92.6854	92.485
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	94.0997	93.8962	sus_scrofa_berkshire	ENSSSCP00065004379	92.6854	92.485
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.8983	99.8983	sus_scrofa_meishan	ENSSSCP00040023403	99.8983	99.8983
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	99.8983	99.8983	sus_scrofa_rongchang	ENSSSCP00030007593	99.8983	99.8983
ENSSSCG00050047251	sus_scrofa_bamei	ENSSSCP00050027728	95.2187	91.0478	ovis_aries_rambouillet	ENSOARP00020000888	88.7204	84.8341

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression