RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050034351	Gene ID		Accession	-
Symbol	RNGTT	Alias	-	Full Name	NA
Status	Confidence	Length	210947 bases	Strand	Plus strand
Position	LUXV01076570.1 : 1309789 - 1520735	RNA binding domain	mRNA_cap_enzyme , mRNA_cap_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050018979	mRNA_cap_enzyme	PF01331	3.2e-77	1
ENSSSCP00050018979	mRNA_cap_C	PF03919	7.9e-20	2
ENSSSCP00050018959	mRNA_cap_enzyme	PF01331	3.5e-77	1
ENSSSCP00050018959	mRNA_cap_C	PF03919	8.6e-20	2
ENSSSCP00050018963	mRNA_cap_enzyme	PF01331	3.4e-61	1
ENSSSCP00050018963	mRNA_cap_C	PF03919	8.2e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RNGTT-201	ENSSSCT00050046076	3786	597aa	ENSSSCP00050018959
RNGTT-202	ENSSSCT00050046081	3717	574aa	ENSSSCP00050018963
RNGTT-203	ENSSSCT00050046108	4333	568aa	ENSSSCP00050018979

Gene Model

Click here to download ENSSSCG00050034351's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050034351's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050030556	39.8089	24.8408	sus_scrofa_bamei	ENSSSCP00050018959	20.938	13.0653

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	94.8074	93.1323	sus_scrofa_usmarc	ENSSSCP00070041644	87.8882	86.3354
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa	ENSSSCP00000044017	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	96.1474	96.1474	sus_scrofa_largewhite	ENSSSCP00025039203	100	100
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	98.995	98.4925	equus_caballus	ENSECAP00000044531	96.4111	95.9217
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	98.8275	97.99	bos_taurus	ENSBTAP00000003532	99.1597	98.3193
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	94.6399	94.6399	sus_scrofa_wuzhishan	ENSSSCP00005024768	97.9203	97.9203
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_jinhua	ENSSSCP00060029304	100	100
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_landrace	ENSSSCP00045034768	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_tibetan	ENSSSCP00015018677	100	100
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_pietrain	ENSSSCP00055005033	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	99.8325	99.8325	sus_scrofa_hampshire	ENSSSCP00035041645	95.6661	95.6661
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_berkshire	ENSSSCP00065037054	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_meishan	ENSSSCP00040046207	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	100	100	sus_scrofa_rongchang	ENSSSCP00030036926	95.8266	95.8266
ENSSSCG00050034351	sus_scrofa_bamei	ENSSSCP00050018959	98.8275	97.8224	ovis_aries_rambouillet	ENSOARP00020016788	99.1597	98.1513

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression