RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050031163	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	965 bases	Strand	Plus strand
Position	LUXV01046096.1 : 1602584 - 1603548	RNA binding domain	Ribosomal_S17e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050017346	Ribosomal_S17e	PF00833	1.2e-40	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050041916	396	131aa	ENSSSCP00050017346

Gene Model

Click here to download ENSSSCG00050031163's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050031163's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050029156	75.5556	70.3704	sus_scrofa_bamei	ENSSSCP00050017346	77.8626	72.5191
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050044228	77.037	71.8519	sus_scrofa_bamei	ENSSSCP00050017346	79.3893	74.0458

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	91.6031	90.0763	sus_scrofa_usmarc	ENSSSCP00070004747	86.9565	85.5072
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	91.6031	90.0763	sus_scrofa	ENSSSCP00000014971	86.9565	85.5072
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	91.6031	90.0763	sus_scrofa_largewhite	ENSSSCP00025004651	86.9565	85.5072
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	68.7023	63.3588	equus_caballus	ENSECAP00000022453	70.8661	65.3543
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	79.3893	74.0458	equus_caballus	ENSECAP00000087824	77.037	71.8519
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	79.3893	74.0458	bos_taurus	ENSBTAP00000000814	50.7317	47.3171
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	93.8931	92.3664	sus_scrofa_jinhua	ENSSSCP00060008506	89.1304	87.6812
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	91.6031	90.0763	sus_scrofa_landrace	ENSSSCP00045002239	86.9565	85.5072
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	77.8626	72.5191	sus_scrofa_pietrain	ENSSSCP00055016122	75.5556	70.3704
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	91.6031	90.0763	sus_scrofa_hampshire	ENSSSCP00035020128	86.9565	85.5072
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	70.229	65.6489	sus_scrofa_berkshire	ENSSSCP00065009036	75.4098	70.4918
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	99.2366	99.2366	sus_scrofa_rongchang	ENSSSCP00030038625	92.8571	92.8571
ENSSSCG00050031163	sus_scrofa_bamei	ENSSSCP00050017346	72.5191	67.9389	ovis_aries_rambouillet	ENSOARP00020015702	69.8529	65.4412

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression