RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00050029685	Gene ID		Accession	-
Symbol	CCAR1	Alias	-	Full Name	NA
Status	Confidence	Length	67415 bases	Strand	Minus strand
Position	LUXV01021415.1 : 3207603 - 3275017	RNA binding domain	SAP , S1-like
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050016562	SAP	PF02037	3.3e-08	1
ENSSSCP00050016562	S1-like	PF14444	1.4e-34	2
ENSSSCP00050016551	SAP	PF02037	3.5e-08	1
ENSSSCP00050016551	S1-like	PF14444	1.4e-34	2
ENSSSCP00050016557	SAP	PF02037	3.6e-08	1
ENSSSCP00050016557	S1-like	PF14444	1.5e-34	2
ENSSSCP00050016568	SAP	PF02037	3.6e-08	1
ENSSSCP00050016568	S1-like	PF14444	1.5e-34	2
ENSSSCP00050016548	S1-like	PF14444	5.8e-35	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CCAR1-201	ENSSSCT00050039942	4403	568aa	ENSSSCP00050016548
CCAR1-202	ENSSSCT00050039949	4854	1093aa	ENSSSCP00050016551
CCAR1-203	ENSSSCT00050039967	3947	1139aa	ENSSSCP00050016557
CCAR1-204	ENSSSCT00050039978	3673	1063aa	ENSSSCP00050016562
CCAR1-205	ENSSSCT00050039986	3614	1152aa	ENSSSCP00050016568

Gene Model

Click here to download ENSSSCG00050029685's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050029685's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050047105	56.1269	36.6521	sus_scrofa_bamei	ENSSSCP00050016568	44.5312	29.0799

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_usmarc	ENSSSCP00070016461	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	99.9132	sus_scrofa	ENSSSCP00000010920	100	99.9132
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_largewhite	ENSSSCP00025048787	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	99.1319	98.3507	equus_caballus	ENSECAP00000014412	99.3043	98.5217
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	98.0035	97.3958	bos_taurus	ENSBTAP00000050465	99.2091	98.594
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_wuzhishan	ENSSSCP00005011642	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_jinhua	ENSSSCP00060009401	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	99.9132	sus_scrofa_landrace	ENSSSCP00045026353	100	99.9132
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_tibetan	ENSSSCP00015000841	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_pietrain	ENSSSCP00055043829	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_hampshire	ENSSSCP00035016115	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_berkshire	ENSSSCP00065041553	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_meishan	ENSSSCP00040011693	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	100	100	sus_scrofa_rongchang	ENSSSCP00030015617	100	100
ENSSSCG00050029685	sus_scrofa_bamei	ENSSSCP00050016568	98.9583	98.3507	ovis_aries_rambouillet	ENSOARP00020012001	99.2167	98.6075

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression