RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050019076	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	96269 bases	Strand	Minus strand
Position	LUXV01021140.1 : 63260 - 159528	RNA binding domain	Exo_endo_phos , DUF1866
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050010721	Exo_endo_phos	PF03372	9e-13	1
ENSSSCP00050010721	DUF1866	PF08952	6.7e-57	2
ENSSSCP00050010705	Exo_endo_phos	PF03372	9.1e-13	1
ENSSSCP00050010705	DUF1866	PF08952	7e-57	2
ENSSSCP00050010689	Exo_endo_phos	PF03372	1.1e-12	1
ENSSSCP00050010689	DUF1866	PF08952	8.1e-57	2
ENSSSCP00050010717	Exo_endo_phos	PF03372	1.2e-12	1
ENSSSCP00050010717	DUF1866	PF08952	8.3e-57	2
ENSSSCP00050010684	Exo_endo_phos	PF03372	1.2e-12	1
ENSSSCP00050010684	DUF1866	PF08952	8.3e-57	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050025768	6636	1478aa	ENSSSCP00050010684
-	ENSSSCT00050025779	6501	1433aa	ENSSSCP00050010689
-	ENSSSCT00050025821	8760	1284aa	ENSSSCP00050010705
-	ENSSSCT00050025851	4608	1476aa	ENSSSCP00050010717
-	ENSSSCT00050025868	4011	1277aa	ENSSSCP00050010721

Gene Model

Click here to download ENSSSCG00050019076's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050019076's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050016115	29.6811	17.0074	sus_scrofa_bamei	ENSSSCP00050010684	24.5602	14.0731
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050015764	35.6164	23.2877	sus_scrofa_bamei	ENSSSCP00050010684	15.8322	10.3518
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050037123	24.2188	10.9375	sus_scrofa_bamei	ENSSSCP00050010684	2.09743	0.947226
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050036422	27.8195	15.7895	sus_scrofa_bamei	ENSSSCP00050010684	2.50338	1.42084
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050027391	30.6922	17.598	sus_scrofa_bamei	ENSSSCP00050010684	24.8985	14.276
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050036576	45.302	26.1745	sus_scrofa_bamei	ENSSSCP00050010684	18.2679	10.5548
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050008214	35.082	19.7814	sus_scrofa_bamei	ENSSSCP00050010684	21.7185	12.2463
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050009338	34.8632	19.594	sus_scrofa_bamei	ENSSSCP00050010684	26.7253	15.0203
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050006495	36.3333	22.1111	sus_scrofa_bamei	ENSSSCP00050010684	22.1245	13.4641
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050008438	38.8773	23.7006	sus_scrofa_bamei	ENSSSCP00050010684	12.6522	7.71313
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050029821	59.5828	44.0678	sus_scrofa_bamei	ENSSSCP00050010684	61.8403	45.7375
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050034163	35.7065	19.8248	sus_scrofa_bamei	ENSSSCP00050010684	22.0568	12.2463
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050046597	29.0807	18.1989	sus_scrofa_bamei	ENSSSCP00050010684	20.9743	13.1258

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	97.429	97.0907	sus_scrofa_usmarc	ENSSSCP00070045324	98.3607	98.0191
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	90.866	90.4601	sus_scrofa	ENSSSCP00000020455	95.7917	95.3638
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.1881	99.0528	sus_scrofa_largewhite	ENSSSCP00025039300	99.6601	99.5241
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	92.6252	88.8363	equus_caballus	ENSECAP00000038258	86.2091	82.6826
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	92.9635	89.5129	bos_taurus	ENSBTAP00000038897	92.4008	88.9711
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	18.065	17.7267	sus_scrofa_wuzhishan	ENSSSCP00005011162	93.0314	91.2892
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	55.1421	55.0744	sus_scrofa_wuzhishan	ENSSSCP00005011320	99.5116	99.3895
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.594	99.5264	sus_scrofa_jinhua	ENSSSCP00060022488	99.594	99.5264
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.6617	99.594	sus_scrofa_landrace	ENSSSCP00045039548	99.6617	99.594
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	83.4235	83.3559	sus_scrofa_tibetan	ENSSSCP00015040922	99.5961	99.5154
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.7294	99.594	sus_scrofa_pietrain	ENSSSCP00055030758	99.7294	99.594
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.1881	99.0528	sus_scrofa_hampshire	ENSSSCP00035034844	99.6601	99.5241
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.7294	99.594	sus_scrofa_berkshire	ENSSSCP00065034910	99.7294	99.594
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	99.3234	99.2558	sus_scrofa_meishan	ENSSSCP00040018543	99.7961	99.7281
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	92.3545	91.5426	sus_scrofa_rongchang	ENSSSCP00030036284	95.1883	94.3515
ENSSSCG00050019076	sus_scrofa_bamei	ENSSSCP00050010684	81.9351	78.2138	ovis_aries_rambouillet	ENSOARP00020005473	94.6833	90.3831

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression