RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050014794	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3632 bases	Strand	Plus strand
Position	LUXV01023375.1 : 466354 - 469985	RNA binding domain	Ribosomal_S27e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050008325	Ribosomal_S27e	PF01667	2.8e-28	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00050019999	1106	84aa	ENSSSCP00050008325

Gene Model

Click here to download ENSSSCG00050014794's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050014794's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050014794	sus_scrofa_bamei	ENSSSCP00050039404	96.4286	94.0476	sus_scrofa_bamei	ENSSSCP00050008325	96.4286	94.0476

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050014794	sus_scrofa_bamei	ENSSSCP00050008325	95.2381	95.2381	sus_scrofa_usmarc	ENSSSCP00070018939	96.3855	96.3855
ENSSSCG00050014794	sus_scrofa_bamei	ENSSSCP00050008325	95.2381	95.2381	sus_scrofa	ENSSSCP00000078376	96.3855	96.3855
ENSSSCG00050014794	sus_scrofa_bamei	ENSSSCP00050008325	100	100	sus_scrofa_meishan	ENSSSCP00040020145	100	100
ENSSSCG00050014794	sus_scrofa_bamei	ENSSSCP00050008325	100	100	sus_scrofa_rongchang	ENSSSCP00030038677	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression