| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00050012659 | Gene ID |
|
Accession |
- |
| Symbol |
SMARCA1 |
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
75972 bases |
Strand |
Plus strand |
| Position |
LUXV01023973.1 : 2262160 - 2338131 |
RNA binding domain |
ResIII , DEAD |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00050007030 |
ResIII |
PF04851 |
4.3e-12 |
1 |
| ENSSSCP00050007030 |
DEAD |
PF00270 |
1.3e-06 |
2 |
| ENSSSCP00050007026 |
ResIII |
PF04851 |
7.6e-12 |
1 |
| ENSSSCP00050007026 |
DEAD |
PF00270 |
1.9e-06 |
2 |
| ENSSSCP00050007043 |
ResIII |
PF04851 |
7.8e-12 |
1 |
| ENSSSCP00050007043 |
DEAD |
PF00270 |
1.7e-06 |
2 |
| ENSSSCP00050007040 |
ResIII |
PF04851 |
7.8e-12 |
1 |
| ENSSSCP00050007040 |
DEAD |
PF00270 |
1.9e-06 |
2 |
| ENSSSCP00050007058 |
ResIII |
PF04851 |
8.1e-12 |
1 |
| ENSSSCP00050007058 |
DEAD |
PF00270 |
1.6e-06 |
2 |
| ENSSSCP00050007064 |
ResIII |
PF04851 |
8.7e-12 |
1 |
| ENSSSCP00050007064 |
DEAD |
PF00270 |
1.6e-06 |
2 |
| ENSSSCP00050007045 |
ResIII |
PF04851 |
9.3e-12 |
1 |
| ENSSSCP00050007045 |
DEAD |
PF00270 |
1.7e-06 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| SMARCA1-201 |
ENSSSCT00050017090 |
4263 |
1061aa |
ENSSSCP00050007026 |
| SMARCA1-202 |
ENSSSCT00050017097 |
3330 |
750aa |
ENSSSCP00050007030 |
| SMARCA1-203 |
ENSSSCT00050017122 |
4113 |
1051aa |
ENSSSCP00050007040 |
| SMARCA1-204 |
ENSSSCT00050017129 |
3994 |
1022aa |
ENSSSCP00050007043 |
| SMARCA1-205 |
ENSSSCT00050017134 |
4985 |
1005aa |
ENSSSCP00050007045 |
| SMARCA1-207 |
ENSSSCT00050017157 |
3739 |
1000aa |
ENSSSCP00050007058 |
| SMARCA1-206 |
ENSSSCT00050017166 |
2904 |
967aa |
ENSSSCP00050007064 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050038642 | 33.1384 | 20.6628 | sus_scrofa_bamei | ENSSSCP00050007026 | 32.0452 | 19.9811 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050022664 | 14.2624 | 7.56028 | sus_scrofa_bamei | ENSSSCP00050007026 | 32.8935 | 17.4364 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050037361 | 25.355 | 14.6721 | sus_scrofa_bamei | ENSSSCP00050007026 | 35.344 | 20.4524 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007050 | 25.7937 | 14.5833 | sus_scrofa_bamei | ENSSSCP00050007026 | 24.5052 | 13.8549 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050029062 | 25.2439 | 16.5244 | sus_scrofa_bamei | ENSSSCP00050007026 | 39.0198 | 25.5419 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050011902 | 27.0809 | 16.354 | sus_scrofa_bamei | ENSSSCP00050007026 | 43.5438 | 26.2959 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050011183 | 17.6491 | 10.7836 | sus_scrofa_bamei | ENSSSCP00050007026 | 47.9736 | 29.312 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050043546 | 25.3403 | 13.1937 | sus_scrofa_bamei | ENSSSCP00050007026 | 22.8087 | 11.8756 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050001511 | 37.0817 | 22.7577 | sus_scrofa_bamei | ENSSSCP00050007026 | 26.1074 | 16.0226 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050032120 | 26.0563 | 13.3803 | sus_scrofa_bamei | ENSSSCP00050007026 | 24.4109 | 12.5353 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050039151 | 27.506 | 16.9206 | sus_scrofa_bamei | ENSSSCP00050007026 | 32.328 | 19.8869 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050025090 | 26.9953 | 16.8427 | sus_scrofa_bamei | ENSSSCP00050007026 | 43.3553 | 27.05 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050042537 | 17.6852 | 10.8707 | sus_scrofa_bamei | ENSSSCP00050007026 | 30.82 | 18.9444 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050013051 | 37.5951 | 23.4399 | sus_scrofa_bamei | ENSSSCP00050007026 | 23.2799 | 14.5146 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050003684 | 21.5261 | 12.2829 | sus_scrofa_bamei | ENSSSCP00050007026 | 32.705 | 18.6616 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050025882 | 17.4992 | 10.8951 | sus_scrofa_bamei | ENSSSCP00050007026 | 49.1989 | 30.6315 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050002495 | 21.5852 | 13.2378 | sus_scrofa_bamei | ENSSSCP00050007026 | 48.2564 | 29.5947 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050046328 | 47.6702 | 31.8996 | sus_scrofa_bamei | ENSSSCP00050007026 | 37.606 | 25.1649 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050045436 | 25.7849 | 16.2635 | sus_scrofa_bamei | ENSSSCP00050007026 | 47.2196 | 29.7832 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050003482 | 42.2864 | 28.4129 | sus_scrofa_bamei | ENSSSCP00050007026 | 35.9095 | 24.1282 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050047064 | 14.2225 | 9.03919 | sus_scrofa_bamei | ENSSSCP00050007026 | 42.4128 | 26.9557 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050024954 | 27.1711 | 17.5 | sus_scrofa_bamei | ENSSSCP00050007026 | 38.9255 | 25.0707 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050006418 | 26.0483 | 16.7726 | sus_scrofa_bamei | ENSSSCP00050007026 | 38.6428 | 24.8822 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050004901 | 25.0125 | 16.058 | sus_scrofa_bamei | ENSSSCP00050007026 | 47.1254 | 30.2545 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050020261 | 23.928 | 13.7221 | sus_scrofa_bamei | ENSSSCP00050007026 | 26.2959 | 15.0801 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050044371 | 12.2149 | 6.93533 | sus_scrofa_bamei | ENSSSCP00050007026 | 36.852 | 20.9237 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050036033 | 25.641 | 16.3077 | sus_scrofa_bamei | ENSSSCP00050007026 | 47.1254 | 29.9717 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050044067 | 14.5056 | 7.93369 | sus_scrofa_bamei | ENSSSCP00050007026 | 23.0914 | 12.6296 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050023778 | 89.1326 | 81.5553 | sus_scrofa_bamei | ENSSSCP00050007026 | 84.2601 | 77.0971 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050009578 | 18.1317 | 11.3645 | sus_scrofa_bamei | ENSSSCP00050007026 | 46.4656 | 29.1235 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 99.8115 | 99.8115 | sus_scrofa_usmarc | ENSSSCP00070050483 | 98.6952 | 98.6952 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa | ENSSSCP00000028784 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_largewhite | ENSSSCP00025038401 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 98.0207 | 96.7955 | equus_caballus | ENSECAP00000045959 | 91.8728 | 90.7244 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 99.0575 | 98.115 | bos_taurus | ENSBTAP00000061286 | 96.1574 | 95.2425 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 90.1037 | 90.1037 | sus_scrofa_wuzhishan | ENSSSCP00005024186 | 96.0804 | 96.0804 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060026407 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 54.6654 | 53.1574 | sus_scrofa_landrace | ENSSSCP00045010177 | 94.9264 | 92.3077 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 62.2997 | 61.7342 | sus_scrofa_landrace | ENSSSCP00045047942 | 96.4964 | 95.6204 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055006616 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035017262 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065035629 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 100 | 100 | sus_scrofa_meishan | ENSSSCP00040010190 | 100 | 100 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 98.115 | 98.115 | sus_scrofa_rongchang | ENSSSCP00030012086 | 98.5795 | 98.5795 |
| ENSSSCG00050012659 | sus_scrofa_bamei | ENSSSCP00050007026 | 97.8322 | 96.4185 | ovis_aries_rambouillet | ENSOARP00020020831 | 91.8584 | 90.531 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
