RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050007848	Gene ID		Accession	-
Symbol	FYTTD1	Alias	-	Full Name	NA
Status	Confidence	Length	38928 bases	Strand	Minus strand
Position	LUXV01003912.1 : 1207521 - 1246448	RNA binding domain	FYTT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050004602	FYTT	PF07078	4.2e-178	1
ENSSSCP00050004604	FYTT	PF07078	4.1e-154	1
ENSSSCP00050004604	FYTT	PF07078	4.1e-154	2
ENSSSCP00050004607	FYTT	PF07078	8e-150	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FYTTD1-201	ENSSSCT00050010703	4814	324aa	ENSSSCP00050004602
FYTTD1-202	ENSSSCT00050010709	4671	292aa	ENSSSCP00050004604
FYTTD1-203	ENSSSCT00050010718	3385	274aa	ENSSSCP00050004607

Gene Model

Click here to download ENSSSCG00050007848's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050007848's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050007848

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	97.8395	97.5309	sus_scrofa_usmarc	ENSSSCP00070017955	100	99.6845
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	88.2716	87.6543	sus_scrofa	ENSSSCP00000061730	95.3333	94.6667
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_largewhite	ENSSSCP00025019758	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	83.3333	79.0123	equus_caballus	ENSECAP00000076987	83.5913	79.257
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	95.3704	93.8272	bos_taurus	ENSBTAP00000043895	97.1698	95.5975
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_wuzhishan	ENSSSCP00005005840	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_jinhua	ENSSSCP00060032093	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_landrace	ENSSSCP00045038742	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_tibetan	ENSSSCP00015035304	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_pietrain	ENSSSCP00055049056	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_hampshire	ENSSSCP00035045960	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_berkshire	ENSSSCP00065007503	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_meishan	ENSSSCP00040015526	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	100	100	sus_scrofa_rongchang	ENSSSCP00030026208	100	100
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	45.9877	44.1358	ovis_aries_rambouillet	ENSOARP00020025420	96.129	92.2581
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	95.3704	94.1358	ovis_aries_rambouillet	ENSOARP00020002213	97.1698	95.9119
ENSSSCG00050007848	sus_scrofa_bamei	ENSSSCP00050004602	40.1235	37.037	ovis_aries_rambouillet	ENSOARP00020020469	89.6552	82.7586

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression