RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00050004361	Gene ID		Accession	-
Symbol	HELZ	Alias	-	Full Name	NA
Status	Confidence	Length	160915 bases	Strand	Plus strand
Position	LUXV01009418.1 : 1196463 - 1357377	RNA binding domain	ResIII , zf-CCCH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00050002664	ResIII	PF04851	6.2e-05	1
ENSSSCP00050002664	zf-CCCH	PF00642	2.1e-07	2
ENSSSCP00050002652	zf-CCCH	PF00642	1.5e-07	1
ENSSSCP00050002659	zf-CCCH	PF00642	2.1e-07	1
ENSSSCP00050002644	zf-CCCH	PF00642	2.1e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
HELZ-201	ENSSSCT00050006034	7146	1915aa	ENSSSCP00050002644
HELZ-203	ENSSSCT00050006043	2823	144aa	ENSSSCP00050002648
HELZ-202	ENSSSCT00050006047	2771	191aa	ENSSSCP00050002649
HELZ-204	ENSSSCT00050006056	6892	1500aa	ENSSSCP00050002652
HELZ-207	ENSSSCT00050006067	7029	1910aa	ENSSSCP00050002659
HELZ-206	ENSSSCT00050006077	7290	1945aa	ENSSSCP00050002664
HELZ-205	ENSSSCT00050006087	2907	155aa	ENSSSCP00050002671
HELZ-208	ENSSSCT00050006090	2588	254aa	ENSSSCP00050002673

Gene Model

Click here to download ENSSSCG00050004361's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00050004361's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050016949	37.69	21.8845	sus_scrofa_bamei	ENSSSCP00050002664	19.126	11.1054
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050007471	22.6376	12.7726	sus_scrofa_bamei	ENSSSCP00050002664	22.4165	12.6478
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050036824	28.2704	16.2423	sus_scrofa_bamei	ENSSSCP00050002664	16.5553	9.51157
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050038097	42.8571	29.4118	sus_scrofa_bamei	ENSSSCP00050002664	2.62211	1.79949
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050038182	18.7251	7.56972	sus_scrofa_bamei	ENSSSCP00050002664	2.41645	0.976864
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050017477	27.9661	14.1243	sus_scrofa_bamei	ENSSSCP00050002664	15.2699	7.71208
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050018414	22.319	11.7292	sus_scrofa_bamei	ENSSSCP00050002664	17.1208	8.99743
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050026911	16.3303	8.33333	sus_scrofa_bamei	ENSSSCP00050002664	22.4679	11.4653
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050011141	29.2705	16.3435	sus_scrofa_bamei	ENSSSCP00050002664	16.2982	9.10026
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050017973	13.5424	8.02895	sus_scrofa_bamei	ENSSSCP00050002664	20.2057	11.9794

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	99.9486	99.9486	sus_scrofa_usmarc	ENSSSCP00070006468	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	100	100	sus_scrofa	ENSSSCP00000051225	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	99.9486	99.9486	sus_scrofa_largewhite	ENSSSCP00025034024	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	89.9229	88.2776	equus_caballus	ENSECAP00000044063	98.6464	96.8415
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	96.6581	94.3959	bos_taurus	ENSBTAP00000006233	97.1074	94.8347
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	98.4576	98.4576	sus_scrofa_wuzhishan	ENSSSCP00005013125	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	98.4576	98.4576	sus_scrofa_jinhua	ENSSSCP00060032440	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	100	100	sus_scrofa_landrace	ENSSSCP00045044835	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	98.4576	98.4576	sus_scrofa_tibetan	ENSSSCP00015016886	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	100	100	sus_scrofa_pietrain	ENSSSCP00055045376	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	98.4576	98.4576	sus_scrofa_hampshire	ENSSSCP00035043803	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	100	100	sus_scrofa_berkshire	ENSSSCP00065014646	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	49.2031	47.9177	sus_scrofa_meishan	ENSSSCP00040043023	95.3187	92.8287
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	100	100	sus_scrofa_rongchang	ENSSSCP00030032200	100	100
ENSSSCG00050004361	sus_scrofa_bamei	ENSSSCP00050002664	95.8869	92.6478	ovis_aries_rambouillet	ENSOARP00020011436	96.2829	93.0305

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression