Description

Ensembl ID ENSSSCG00050003079 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 115053 bases Strand Minus strand
Position LUXV01009346.1 : 821601 - 936653 RNA binding domain LsmAD , PAM2 , SM-ATX
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00050001701 LsmAD PF06741 2.6e-15 1
ENSSSCP00050001701 PAM2 PF07145 6.3e-06 2
ENSSSCP00050001701 SM-ATX PF14438 9.5e-21 3
ENSSSCP00050001756 LsmAD PF06741 2.9e-15 1
ENSSSCP00050001756 PAM2 PF07145 6.8e-06 2
ENSSSCP00050001756 SM-ATX PF14438 1e-20 3
ENSSSCP00050001731 LsmAD PF06741 3.2e-15 1
ENSSSCP00050001731 PAM2 PF07145 7.3e-06 2
ENSSSCP00050001731 SM-ATX PF14438 1.1e-20 3
ENSSSCP00050001714 LsmAD PF06741 3.3e-15 1
ENSSSCP00050001714 PAM2 PF07145 7.4e-06 2
ENSSSCP00050001714 SM-ATX PF14438 1.1e-20 3
ENSSSCP00050001627 LsmAD PF06741 3.3e-15 1
ENSSSCP00050001627 PAM2 PF07145 7.4e-06 2
ENSSSCP00050001627 SM-ATX PF14438 1.1e-20 3
ENSSSCP00050001613 LsmAD PF06741 3.5e-15 1
ENSSSCP00050001613 PAM2 PF07145 7.4e-06 2
ENSSSCP00050001613 SM-ATX PF14438 1.2e-20 3
ENSSSCP00050001657 LsmAD PF06741 3.5e-15 1
ENSSSCP00050001657 PAM2 PF07145 7.7e-06 2
ENSSSCP00050001657 SM-ATX PF14438 1.2e-20 3
ENSSSCP00050001607 LsmAD PF06741 3.5e-15 1
ENSSSCP00050001607 PAM2 PF07145 7.5e-06 2
ENSSSCP00050001607 SM-ATX PF14438 1.2e-20 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00050004165 5476 1177aa ENSSSCP00050001607
- ENSSSCT00050004176 5434 1163aa ENSSSCP00050001613
- ENSSSCT00050004201 5556 1155aa ENSSSCP00050001627
- ENSSSCT00050004260 4147 1203aa ENSSSCP00050001657
- ENSSSCT00050004327 6310 1008aa ENSSSCP00050001701
- ENSSSCT00050004347 4536 1158aa ENSSSCP00050001714
- ENSSSCT00050004398 4485 1141aa ENSSSCP00050001731
- ENSSSCT00050004448 6164 1078aa ENSSSCP00050001756

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005003920150.858236.766sus_scrofa_bameiENSSSCP0005000165746.799733.8321

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165798.254497.6725sus_scrofa_usmarcENSSSCP0007002189690.993190.4542
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165798.254497.6725sus_scrofaENSSSCP0000003118288.539388.015
ENSSSCG00050003079sus_scrofa_bameiENSSSCP00050001657100100sus_scrofa_largewhiteENSSSCP00025011137100100
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165783.790581.9618equus_caballusENSECAP0000002612286.006884.1297
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165795.511293.35bos_taurusENSBTAP0000002961887.442985.4642
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165775.561174.9792sus_scrofa_wuzhishanENSSSCP0000501507271.574871.0236
ENSSSCG00050003079sus_scrofa_bameiENSSSCP00050001657100100sus_scrofa_jinhuaENSSSCP00060024678100100
ENSSSCG00050003079sus_scrofa_bameiENSSSCP00050001657100100sus_scrofa_landraceENSSSCP00045037604100100
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165781.130580.0499sus_scrofa_tibetanENSSSCP0001502525182.922781.8182
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165799.916999.9169sus_scrofa_pietrainENSSSCP0005503573699.916999.9169
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165799.916999.9169sus_scrofa_hampshireENSSSCP0003504143799.916999.9169
ENSSSCG00050003079sus_scrofa_bameiENSSSCP00050001657100100sus_scrofa_berkshireENSSSCP00065047859100100
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165798.337597.7556sus_scrofa_meishanENSSSCP0004000283291.070190.5312
ENSSSCG00050003079sus_scrofa_bameiENSSSCP00050001657100100sus_scrofa_rongchangENSSSCP00030036854100100
ENSSSCG00050003079sus_scrofa_bameiENSSSCP0005000165794.01592.02ovis_aries_rambouilletENSOARP0002002264788.497786.6197

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression