RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045038974	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5612 bases	Strand	Minus strand
Position	LUXT01084607.1 : 199373 - 204984	RNA binding domain	DBR1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045048149	DBR1	PF05011	2.1e-37	1
ENSSSCP00045048146	DBR1	PF05011	2.6e-37	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045067744	2182	372aa	ENSSSCP00045048146
-	ENSSSCT00045067748	1680	341aa	ENSSSCP00045048149

Gene Model

Click here to download ENSSSCG00045038974's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045038974's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045040473	5.38462	3.84615	sus_scrofa_landrace	ENSSSCP00045048146	1.88172	1.34409

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	93.0107	88.4409	equus_caballus	ENSECAP00000030770	63.6029	60.4779
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa	ENSSSCP00000056429	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_usmarc	ENSSSCP00070015432	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	99.7312	sus_scrofa_rongchang	ENSSSCP00030033629	69.0167	68.8312
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_wuzhishan	ENSSSCP00005027145	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_jinhua	ENSSSCP00060025427	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	95.9677	91.3979	bos_taurus	ENSBTAP00000026574	65.625	62.5
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	99.7312	sus_scrofa_bamei	ENSSSCP00050037721	69.0167	68.8312
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	95.4301	90.3226	ovis_aries_rambouillet	ENSOARP00020019091	65.2574	61.7647
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_berkshire	ENSSSCP00065030323	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_hampshire	ENSSSCP00035021266	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	99.7312	sus_scrofa_meishan	ENSSSCP00040014384	69.0167	68.8312
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_tibetan	ENSSSCP00015004842	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_pietrain	ENSSSCP00055046261	69.0167	69.0167
ENSSSCG00045038974	sus_scrofa_landrace	ENSSSCP00045048146	100	100	sus_scrofa_largewhite	ENSSSCP00025000307	69.0167	69.0167

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression