RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045037018	Gene ID		Accession	-
Symbol	RPS15	Alias	-	Full Name	NA
Status	Confidence	Length	3416 bases	Strand	Plus strand
Position	LUXT01078377.1 : 1012284 - 1015699	RNA binding domain	Ribosomal_S19
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045045046	Ribosomal_S19	PF00203	7.7e-38	1
ENSSSCP00045045077	Ribosomal_S19	PF00203	1.3e-31	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPS15-201	ENSSSCT00045063827	2470	145aa	ENSSSCP00045045046
RPS15-202	ENSSSCT00045063866	749	141aa	ENSSSCP00045045077

Gene Model

Click here to download ENSSSCG00045037018's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045037018's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045010572	56.4626	46.2585	sus_scrofa_landrace	ENSSSCP00045045046	57.2414	46.8966

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	100	100	equus_caballus	ENSECAP00000049035	93.5484	93.5484
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa	ENSSSCP00000077697	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_usmarc	ENSSSCP00070045332	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	100	100	sus_scrofa_rongchang	ENSSSCP00030018319	100	100
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_wuzhishan	ENSSSCP00005025802	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	100	100	sus_scrofa_jinhua	ENSSSCP00060024435	100	100
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	98.6207	bos_taurus	ENSBTAP00000026278	99.3103	98.6207
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	100	100	sus_scrofa_bamei	ENSSSCP00050034588	100	100
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	98.6207	ovis_aries_rambouillet	ENSOARP00020020473	99.3103	98.6207
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	90.3448	88.2759	ovis_aries_rambouillet	ENSOARP00020013415	95.6204	93.4307
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	97.931	97.2414	ovis_aries_rambouillet	ENSOARP00020013139	93.4211	92.7632
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_berkshire	ENSSSCP00065000353	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_hampshire	ENSSSCP00035034640	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_meishan	ENSSSCP00040009308	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_tibetan	ENSSSCP00015047193	94.7368	94.7368
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	100	100	sus_scrofa_pietrain	ENSSSCP00055015295	100	100
ENSSSCG00045037018	sus_scrofa_landrace	ENSSSCP00045045046	99.3103	99.3103	sus_scrofa_largewhite	ENSSSCP00025000295	94.7368	94.7368

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression