RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045036334	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	21973 bases	Strand	Plus strand
Position	LUXT01044373.1 : 367641 - 389613	RNA binding domain	HVSL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045044081	HVSL	PF09749	1e-49	1
ENSSSCP00045044081	HVSL	PF09749	1e-49	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045062566	1781	251aa	ENSSSCP00045044081

Gene Model

Click here to download ENSSSCG00045036334's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045036334's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045036334

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	91.6335	86.4542	equus_caballus	ENSECAP00000017029	64.6067	60.9551
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	99.2032	99.2032	sus_scrofa	ENSSSCP00000003027	93.2584	93.2584
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	99.6016	99.2032	sus_scrofa_usmarc	ENSSSCP00070033692	92.9368	92.5651
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	72.51	66.9323	sus_scrofa_rongchang	ENSSSCP00030039746	67.658	62.4535
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	89.6414	87.6494	sus_scrofa_wuzhishan	ENSSSCP00005030819	79.7872	78.0142
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_jinhua	ENSSSCP00060047809	100	100
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	91.6335	88.4462	bos_taurus	ENSBTAP00000020923	86.7924	83.7736
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_bamei	ENSSSCP00050020226	100	100
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	92.0319	88.0478	ovis_aries_rambouillet	ENSOARP00020010706	87.1698	83.3962
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	72.51	67.3307	sus_scrofa_berkshire	ENSSSCP00065045060	67.658	62.8253
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_hampshire	ENSSSCP00035047395	100	100
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_meishan	ENSSSCP00040015644	100	100
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_tibetan	ENSSSCP00015013028	100	100
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	90.0398	88.0478	sus_scrofa_pietrain	ENSSSCP00055033822	80.1418	78.3688
ENSSSCG00045036334	sus_scrofa_landrace	ENSSSCP00045044081	100	100	sus_scrofa_largewhite	ENSSSCP00025035203	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression