RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045025304	Gene ID	100515360	Accession	-
Symbol	ILF3	Alias	-	Full Name	interleukin enhancer binding factor 3
Status	Confidence	Length	29443 bases	Strand	Plus strand
Position	LUXT01009527.1 : 121983 - 151425	RNA binding domain	dsrm , DZF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045030421	dsrm	PF00035	6e-24	1
ENSSSCP00045030421	dsrm	PF00035	6e-24	2
ENSSSCP00045030421	DZF	PF07528	1.3e-108	3
ENSSSCP00045030232	dsrm	PF00035	6e-24	1
ENSSSCP00045030232	dsrm	PF00035	6e-24	2
ENSSSCP00045030232	DZF	PF07528	1.3e-108	3
ENSSSCP00045030003	dsrm	PF00035	2.1e-23	1
ENSSSCP00045030003	dsrm	PF00035	2.1e-23	2
ENSSSCP00045030003	DZF	PF07528	2.4e-108	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
ILF3-201	ENSSSCT00045043182	3710	929aa	ENSSSCP00045030003
ILF3-202	ENSSSCT00045043503	7084	703aa	ENSSSCP00045030232
ILF3-203	ENSSSCT00045043810	3327	699aa	ENSSSCP00045030421

Gene Model

Click here to download ENSSSCG00045025304's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045025304's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045005756	18.1976	8.4922	sus_scrofa_landrace	ENSSSCP00045030003	11.3025	5.27449
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045040889	12.7796	6.38978	sus_scrofa_landrace	ENSSSCP00045030003	4.30571	2.15285
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045019648	25.2736	18.408	sus_scrofa_landrace	ENSSSCP00045030003	27.3412	19.9139
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045003548	74.4838	59.882	sus_scrofa_landrace	ENSSSCP00045030003	54.3595	43.7029
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045014054	7.75316	3.00633	sus_scrofa_landrace	ENSSSCP00045030003	5.27449	2.04521
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045034148	17.5221	9.02655	sus_scrofa_landrace	ENSSSCP00045030003	10.6566	5.48977
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045029358	20.3557	11.6601	sus_scrofa_landrace	ENSSSCP00045030003	11.0872	6.35091
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045000813	12.2951	6.55738	sus_scrofa_landrace	ENSSSCP00045030003	4.84392	2.58342
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045042495	15.4545	7.4026	sus_scrofa_landrace	ENSSSCP00045030003	12.8095	6.13563
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045003772	6.11354	1.89229	sus_scrofa_landrace	ENSSSCP00045030003	4.52099	1.39935
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045022745	25.8	18.9	sus_scrofa_landrace	ENSSSCP00045030003	27.7718	20.3445
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045040870	41.0256	22.3077	sus_scrofa_landrace	ENSSSCP00045030003	17.2228	9.36491
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045017463	10.6746	4.95303	sus_scrofa_landrace	ENSSSCP00045030003	13.4553	6.24327
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045031480	17.7557	9.51705	sus_scrofa_landrace	ENSSSCP00045030003	13.4553	7.21206

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	92.2497	89.5587	equus_caballus	ENSECAP00000015714	95.3281	92.5473
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	91.3886	91.3886	sus_scrofa	ENSSSCP00000028612	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	95.2637	95.2637	sus_scrofa_usmarc	ENSSSCP00070039671	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_rongchang	ENSSSCP00030016720	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_wuzhishan	ENSSSCP00005039862	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	74.704	74.2734	sus_scrofa_jinhua	ENSSSCP00060019151	98.7198	98.1508
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	92.5727	90.4198	bos_taurus	ENSBTAP00000018818	95.6618	93.4371
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_bamei	ENSSSCP00050031134	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	92.5727	90.4198	ovis_aries_rambouillet	ENSOARP00020008191	95.6618	93.4371
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	74.704	74.2734	sus_scrofa_berkshire	ENSSSCP00065048631	98.7198	98.1508
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_hampshire	ENSSSCP00035014551	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_meishan	ENSSSCP00040002131	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	95.2637	95.2637	sus_scrofa_tibetan	ENSSSCP00015036281	99.5501	99.5501
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	80.6243	80.6243	sus_scrofa_pietrain	ENSSSCP00055042768	100	100
ENSSSCG00045025304	sus_scrofa_landrace	ENSSSCP00045030003	100	100	sus_scrofa_largewhite	ENSSSCP00025046916	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression