RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045024629	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	12776 bases	Strand	Plus strand
Position	LUXT01043359.1 : 1536481 - 1549256	RNA binding domain	PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045029285	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00045029285	PheRS_DBD3	PF18553	6.9e-22	2
ENSSSCP00045029285	tRNA-synt_2d	PF01409	8e-83	3
ENSSSCP00045029176	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00045029176	tRNA-synt_2d	PF01409	1.6e-91	2
ENSSSCP00045029605	PheRS_DBD1	PF18552	2.5e-22	1
ENSSSCP00045029605	PheRS_DBD3	PF18553	7.8e-22	2
ENSSSCP00045029605	tRNA-synt_2d	PF01409	1.6e-91	3
ENSSSCP00045029484	PheRS_DBD1	PF18552	2.9e-22	1
ENSSSCP00045029484	PheRS_DBD3	PF18553	1.1e-21	2
ENSSSCP00045029484	tRNA-synt_2d	PF01409	1.8e-91	3
ENSSSCP00045029385	PheRS_DBD1	PF18552	2.9e-22	1
ENSSSCP00045029385	PheRS_DBD3	PF18553	1.7e-21	2
ENSSSCP00045029385	tRNA-synt_2d	PF01409	1.2e-53	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045042023	1685	475aa	ENSSSCP00045029176
-	ENSSSCT00045042172	1588	474aa	ENSSSCP00045029285
-	ENSSSCT00045042334	5421	519aa	ENSSSCP00045029385
-	ENSSSCT00045042463	5330	508aa	ENSSSCP00045029484
-	ENSSSCT00045042635	5237	477aa	ENSSSCP00045029605

Gene Model

Click here to download ENSSSCG00045024629's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045024629's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045006209	20.48	10.72	sus_scrofa_landrace	ENSSSCP00045029385	24.6628	12.9094
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045023688	27.6151	16.5272	sus_scrofa_landrace	ENSSSCP00045029385	25.4335	15.2216

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	81.1175	76.3006	equus_caballus	ENSECAP00000089849	78.5448	73.8806
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa	ENSSSCP00000014614	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_usmarc	ENSSSCP00070013554	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	99.8073	99.8073	sus_scrofa_rongchang	ENSSSCP00030005290	99.8073	99.8073
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	75.5299	72.6397	sus_scrofa_wuzhishan	ENSSSCP00005031446	78.5571	75.5511
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_jinhua	ENSSSCP00060006719	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	81.3102	77.264	bos_taurus	ENSBTAP00000028494	83.0709	78.937
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_bamei	ENSSSCP00050034764	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	81.6956	77.4566	ovis_aries_rambouillet	ENSOARP00020012731	83.4646	79.1339
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	82.4663	80.5395	sus_scrofa_berkshire	ENSSSCP00065011613	78.6765	76.8382
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_hampshire	ENSSSCP00035024228	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	99.8073	99.8073	sus_scrofa_meishan	ENSSSCP00040007462	99.8073	99.8073
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_tibetan	ENSSSCP00015024007	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	83.237	81.3102	sus_scrofa_pietrain	ENSSSCP00055035781	85.0394	83.0709
ENSSSCG00045024629	sus_scrofa_landrace	ENSSSCP00045029385	99.8073	99.8073	sus_scrofa_largewhite	ENSSSCP00025036939	99.8073	99.8073

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression