RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045022446	Gene ID		Accession	-
Symbol	RPL18A	Alias	-	Full Name	NA
Status	Confidence	Length	14259 bases	Strand	Plus strand
Position	LUXT01072645.1 : 131479 - 145737	RNA binding domain	Ribosomal_L18A
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045026738	Ribosomal_L18A	PF01775	7.7e-56	1
ENSSSCP00045026651	Ribosomal_L18A	PF01775	1.6e-47	1
ENSSSCP00045026780	Ribosomal_L18A	PF01775	8.6e-38	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPL18A-201	ENSSSCT00045038344	2820	147aa	ENSSSCP00045026651
RPL18A-202	ENSSSCT00045038464	2233	224aa	ENSSSCP00045026738
RPL18A-203	ENSSSCT00045038523	2014	137aa	ENSSSCP00045026780

Gene Model

Click here to download ENSSSCG00045022446's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045022446's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045022446

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	46.4286	41.9643	equus_caballus	ENSECAP00000012978	35.7388	32.3024
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa	ENSSSCP00000045882	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_usmarc	ENSSSCP00070025974	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_rongchang	ENSSSCP00030035789	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	78.5714	78.5714	sus_scrofa_wuzhishan	ENSSSCP00005044998	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	55.3571	51.3393	sus_scrofa_jinhua	ENSSSCP00060016246	69.2737	64.2458
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_bamei	ENSSSCP00050042477	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	55.3571	51.3393	sus_scrofa_berkshire	ENSSSCP00065004886	69.2737	64.2458
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_hampshire	ENSSSCP00035010167	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_meishan	ENSSSCP00040028338	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_tibetan	ENSSSCP00015043231	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_pietrain	ENSSSCP00055041406	100	100
ENSSSCG00045022446	sus_scrofa_landrace	ENSSSCP00045026738	100	100	sus_scrofa_largewhite	ENSSSCP00025026507	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression