RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045022287	Gene ID		Accession	-
Symbol	IMP3	Alias	-	Full Name	Sus scrofa IMP U3 small nucleolar ribonucleoprotein 3 (IMP3), mRNA.
Status	Confidence	Length	1129 bases	Strand	Plus strand
Position	LUXT01035977.1 : 782428 - 783556	RNA binding domain	Ribosomal_S4 , S4
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045026427	Ribosomal_S4	PF00163	3.9e-12	1
ENSSSCP00045026427	S4	PF01479	4e-09	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
IMP3-201	ENSSSCT00045038031	1129	184aa	ENSSSCP00045026427

Gene Model

Click here to download ENSSSCG00045022287's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045022287's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045022287

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	99.4565	99.4565	equus_caballus	ENSECAP00000025672	99.4565	99.4565
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	100	100	sus_scrofa	ENSSSCP00000002051	100	100
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	100	100	sus_scrofa_rongchang	ENSSSCP00030030900	100	100
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	100	100	sus_scrofa_bamei	ENSSSCP00050036134	100	100
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	99.4565	98.3696	ovis_aries_rambouillet	ENSOARP00020028178	99.4565	98.3696
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	96.1957	94.0217	ovis_aries_rambouillet	ENSOARP00020032656	96.1957	94.0217
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	100	100	sus_scrofa_meishan	ENSSSCP00040030907	100	100
ENSSSCG00045022287	sus_scrofa_landrace	ENSSSCP00045026427	100	100	sus_scrofa_pietrain	ENSSSCP00055042439	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression