RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045021805	Gene ID		Accession	-
Symbol	XRN2	Alias	-	Full Name	NA
Status	Confidence	Length	89964 bases	Strand	Minus strand
Position	LUXT01066151.1 : 2049207 - 2139170	RNA binding domain	XRN_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045026455	XRN_N	PF03159	1.3e-102	1
ENSSSCP00045026106	XRN_N	PF03159	1.4e-102	1
ENSSSCP00045026589	XRN_N	PF03159	1.4e-102	1
ENSSSCP00045025935	XRN_N	PF03159	1.5e-102	1
ENSSSCP00045026302	XRN_N	PF03159	2.2e-102	1
ENSSSCP00045026742	XRN_N	PF03159	3.5e-82	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
XRN2-201	ENSSSCT00045037290	7335	950aa	ENSSSCP00045025935
XRN2-202	ENSSSCT00045037562	7266	927aa	ENSSSCP00045026106
XRN2-203	ENSSSCT00045037843	7227	914aa	ENSSSCP00045026302
XRN2-204	ENSSSCT00045038073	9118	883aa	ENSSSCP00045026455
XRN2-205	ENSSSCT00045038267	2793	930aa	ENSSSCP00045026589
XRN2-206	ENSSSCT00045038469	2652	883aa	ENSSSCP00045026742

Gene Model

Click here to download ENSSSCG00045021805's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045021805's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045023506	28.7593	19.6684	sus_scrofa_landrace	ENSSSCP00045025935	52.9474	36.2105

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	98.2105	96.8421	equus_caballus	ENSECAP00000016968	96.8847	95.5348
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa	ENSSSCP00000033620	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	100	100	sus_scrofa_usmarc	ENSSSCP00070036088	100	100
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_rongchang	ENSSSCP00030028353	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	97.6842	97.1579	sus_scrofa_wuzhishan	ENSSSCP00005023100	99.0395	98.5059
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_jinhua	ENSSSCP00060044071	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	98.6316	96.7368	bos_taurus	ENSBTAP00000015019	98.5279	96.6351
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_bamei	ENSSSCP00050016854	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	98.6316	96.9474	ovis_aries_rambouillet	ENSOARP00020005691	98.5279	96.8454
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_berkshire	ENSSSCP00065037600	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_hampshire	ENSSSCP00035000137	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	96	95.7895	sus_scrofa_meishan	ENSSSCP00040033655	97.5401	97.3262
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	77.7895	77.7895	sus_scrofa_tibetan	ENSSSCP00015031357	100	100
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_pietrain	ENSSSCP00055011850	97.4194	97.2043
ENSSSCG00045021805	sus_scrofa_landrace	ENSSSCP00045025935	95.3684	95.1579	sus_scrofa_largewhite	ENSSSCP00025037702	97.4194	97.2043

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression