RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045021443	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	401 bases	Strand	Minus strand
Position	LUXT01057039.1 : 2890937 - 2891337	RNA binding domain	Ribosomal_S8
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045025506	Ribosomal_S8	PF00410	7.1e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045036647	159	52aa	ENSSSCP00045025506

Gene Model

Click here to download ENSSSCG00045021443's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045021443's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045023181	30.4348	22.6087	sus_scrofa_landrace	ENSSSCP00045025506	67.3077	50
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045015764	36.1538	35.3846	sus_scrofa_landrace	ENSSSCP00045025506	90.3846	88.4615
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045048729	33.0769	32.3077	sus_scrofa_landrace	ENSSSCP00045025506	82.6923	80.7692

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	80.7692	78.8462	equus_caballus	ENSECAP00000016852	85.7143	83.6735
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	98.0769	98.0769	sus_scrofa	ENSSSCP00000059069	98.0769	98.0769
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	84.6154	82.6923	bos_taurus	ENSBTAP00000060258	34.1085	33.3333
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	96.1538	90.3846	ovis_aries_rambouillet	ENSOARP00020015424	96.1538	90.3846
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	100	100	sus_scrofa_berkshire	ENSSSCP00065017891	100	100
ENSSSCG00045021443	sus_scrofa_landrace	ENSSSCP00045025506	100	100	sus_scrofa_hampshire	ENSSSCP00035029567	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression