RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00045019639 | Gene ID |
|
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
108450 bases |
Strand |
Plus strand |
Position |
LUXT01051486.1 : 1774065 - 1882514 |
RNA binding domain |
SH3_12 , XRN_N , XRN1_D1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00045023357 |
SH3_12 |
PF18129 |
3.6e-19 |
1 |
ENSSSCP00045023357 |
XRN_N |
PF03159 |
1.4e-93 |
2 |
ENSSSCP00045023357 |
XRN1_D1 |
PF18332 |
5.1e-32 |
3 |
ENSSSCP00045023644 |
SH3_12 |
PF18129 |
4.1e-19 |
1 |
ENSSSCP00045023644 |
XRN_N |
PF03159 |
1.6e-93 |
2 |
ENSSSCP00045023644 |
XRN1_D1 |
PF18332 |
1.4e-32 |
3 |
ENSSSCP00045023506 |
SH3_12 |
PF18129 |
4.1e-19 |
1 |
ENSSSCP00045023506 |
XRN_N |
PF03159 |
1.6e-93 |
2 |
ENSSSCP00045023506 |
XRN1_D1 |
PF18332 |
1.5e-32 |
3 |
ENSSSCP00045023226 |
XRN_N |
PF03159 |
7e-95 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
ENSSSCT00045033493 |
3578 |
463aa |
ENSSSCP00045023226 |
- |
ENSSSCT00045033687 |
8444 |
1565aa |
ENSSSCP00045023357 |
- |
ENSSSCT00045033907 |
8371 |
1749aa |
ENSSSCP00045023506 |
- |
ENSSSCT00045034073 |
8292 |
1729aa |
ENSSSCP00045023644 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045025935 | 52.9474 | 36.2105 | sus_scrofa_landrace | ENSSSCP00045023506 | 28.7593 | 19.6684 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 93.1389 | 90.1086 | equus_caballus | ENSECAP00000052827 | 96.1629 | 93.0342 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 97.3128 | 97.2556 | sus_scrofa | ENSSSCP00000067024 | 99.9413 | 99.8826 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 98.7993 | 98.7421 | sus_scrofa_usmarc | ENSSSCP00070012062 | 99.9422 | 99.8843 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030008560 | 100 | 100 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 93.5963 | 93.5963 | sus_scrofa_wuzhishan | ENSSSCP00005022879 | 99.878 | 99.878 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.8285 | sus_scrofa_jinhua | ENSSSCP00060006269 | 99.9428 | 99.8285 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 95.3116 | 92.9674 | bos_taurus | ENSBTAP00000015318 | 97.8861 | 95.4786 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.9428 | sus_scrofa_bamei | ENSSSCP00050010043 | 99.9428 | 99.9428 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 97.0269 | 94.8542 | ovis_aries_rambouillet | ENSOARP00020009210 | 97.5848 | 95.3997 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.8857 | sus_scrofa_berkshire | ENSSSCP00065007265 | 99.9428 | 99.8857 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.8857 | sus_scrofa_hampshire | ENSSSCP00035007668 | 99.9428 | 99.8857 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 95.0257 | 94.9686 | sus_scrofa_meishan | ENSSSCP00040003153 | 99.9399 | 99.8797 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 88.3362 | 88.2218 | sus_scrofa_tibetan | ENSSSCP00015012050 | 98.722 | 98.5942 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.8857 | sus_scrofa_pietrain | ENSSSCP00055031659 | 99.9428 | 99.8857 |
ENSSSCG00045019639 | sus_scrofa_landrace | ENSSSCP00045023506 | 99.9428 | 99.8857 | sus_scrofa_largewhite | ENSSSCP00025040569 | 99.9428 | 99.8857 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |