Description

Ensembl ID ENSSSCG00045019639 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 108450 bases Strand Plus strand
Position LUXT01051486.1 : 1774065 - 1882514 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00045023357 SH3_12 PF18129 3.6e-19 1
ENSSSCP00045023357 XRN_N PF03159 1.4e-93 2
ENSSSCP00045023357 XRN1_D1 PF18332 5.1e-32 3
ENSSSCP00045023644 SH3_12 PF18129 4.1e-19 1
ENSSSCP00045023644 XRN_N PF03159 1.6e-93 2
ENSSSCP00045023644 XRN1_D1 PF18332 1.4e-32 3
ENSSSCP00045023506 SH3_12 PF18129 4.1e-19 1
ENSSSCP00045023506 XRN_N PF03159 1.6e-93 2
ENSSSCP00045023506 XRN1_D1 PF18332 1.5e-32 3
ENSSSCP00045023226 XRN_N PF03159 7e-95 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00045033493 3578 463aa ENSSSCP00045023226
- ENSSSCT00045033687 8444 1565aa ENSSSCP00045023357
- ENSSSCT00045033907 8371 1749aa ENSSSCP00045023506
- ENSSSCT00045034073 8292 1729aa ENSSSCP00045023644

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502593552.947436.2105sus_scrofa_landraceENSSSCP0004502350628.759319.6684

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350693.138990.1086equus_caballusENSECAP0000005282796.162993.0342
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350697.312897.2556sus_scrofaENSSSCP0000006702499.941399.8826
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350698.799398.7421sus_scrofa_usmarcENSSSCP0007001206299.942299.8843
ENSSSCG00045019639sus_scrofa_landraceENSSSCP00045023506100100sus_scrofa_rongchangENSSSCP00030008560100100
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350693.596393.5963sus_scrofa_wuzhishanENSSSCP0000502287999.87899.878
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.8285sus_scrofa_jinhuaENSSSCP0006000626999.942899.8285
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350695.311692.9674bos_taurusENSBTAP0000001531897.886195.4786
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.9428sus_scrofa_bameiENSSSCP0005001004399.942899.9428
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350697.026994.8542ovis_aries_rambouilletENSOARP0002000921097.584895.3997
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.8857sus_scrofa_berkshireENSSSCP0006500726599.942899.8857
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.8857sus_scrofa_hampshireENSSSCP0003500766899.942899.8857
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350695.025794.9686sus_scrofa_meishanENSSSCP0004000315399.939999.8797
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350688.336288.2218sus_scrofa_tibetanENSSSCP0001501205098.72298.5942
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.8857sus_scrofa_pietrainENSSSCP0005503165999.942899.8857
ENSSSCG00045019639sus_scrofa_landraceENSSSCP0004502350699.942899.8857sus_scrofa_largewhiteENSSSCP0002504056999.942899.8857

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression