RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00045019617	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1294 bases	Strand	Plus strand
Position	LUXT01069636.1 : 3675859 - 3677152	RNA binding domain	Ribosomal_S8
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00045023181	Ribosomal_S8	PF00410	7.4e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00045033432	348	115aa	ENSSSCP00045023181

Gene Model

Click here to download ENSSSCG00045019617's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00045019617's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045025506	67.3077	50	sus_scrofa_landrace	ENSSSCP00045023181	30.4348	22.6087
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045015764	77.6923	66.1538	sus_scrofa_landrace	ENSSSCP00045023181	87.8261	74.7826
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045048729	73.0769	62.3077	sus_scrofa_landrace	ENSSSCP00045023181	82.6087	70.4348

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	29.5652	20.8696	equus_caballus	ENSECAP00000059417	60.7143	42.8571
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	71.3043	57.3913	sus_scrofa	ENSSSCP00000040524	69.4915	55.9322
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	71.3043	57.3913	sus_scrofa_usmarc	ENSSSCP00070009091	69.4915	55.9322
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	71.3043	57.3913	sus_scrofa_berkshire	ENSSSCP00065046046	69.4915	55.9322
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	71.3043	57.3913	sus_scrofa_hampshire	ENSSSCP00035041008	69.4915	55.9322
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	86.087	81.7391	sus_scrofa_tibetan	ENSSSCP00015037380	85.3448	81.0345
ENSSSCG00045019617	sus_scrofa_landrace	ENSSSCP00045023181	70.4348	56.5217	sus_scrofa_pietrain	ENSSSCP00055036779	68.6441	55.0847

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression